Sequence
atgc intronic sequence ATGC exonic sequenceAAAGCTTCATATGGTGTACTCGTACAAATTCTTGATCCTCCAAAAGACGGCTTCAATCTCACATTGAAACTGAATTTGTCAAAACTTCCTCCAGATGAAGgttcaacaagtttcttttctaaggtcattatgagcttgccatggctatgctgaaacatataggaacagtttgtcacacattttcatctacataactactc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0011g05400.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os01g46580.1 (Oryza sativa), 5'ss of exon 3
AAAGCTTCATATGGTGTACTCGTACAAATTCTTGATCCTCCAAAAGACGGCTTCAATCTCACATTGAAACTGAATTTGTCAAAACTTCCTCCAGATGAAGgttcaacaagtttcttttctaaggtcattatgagcttgccatggctatgctgaaacatataggaacagtttgtcacacattttcatctacataactactc--
|| || | ||||| | |||| |||||||||||||||||||| || ||||| |||||||| |||| | || ||| |||| ||||| |||||||||||||| | |||| | |||| ||||| | || |||| || ||| || | ||| || || || | | | |
AAGGCAGCTTATGGACCAGTCGTTCAAATTCTTGATCCTCCAAAGGATGGCTTTGATCTCACAATGAAGATAAACTTGACAAAGCTTCCGCCAGATGAAGgttcta-gagttccctttccaaggttaccattgtcttgttgtg-ctacatgattgaattagatgatggttctatgtaccttgagatgtcatccattgataga
upper sequence: Vv01s0011g05400.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA16G14750.1 (Glycine max), 5'ss of exon 3
AAAGCTTCATATGGTGTACTCGTACAAATTCTTGATCCTCCAAAAGACGGCTTCAATCTCACATTGAAACTGAATTTGTCAAAACTTCCTCCAGATGAAGgttcaacaagtttcttttctaaggtcattatgagcttgccatggctatgctgaaacatataggaacagtttgtcacacattttcatctacataactactc--------------------------------------------------------
|| |||||||| || || ||||||||||||||||||| || ||||| || |||||||| ||| | ||| ||||||| ||||| || || ||||| |||| | |||| | || | | ||| || | ||| | ||| || | | ||| | || | | | |||| | |
----CTGCATATGGTAATCTTGTGCAAATTCTTGATCCTCCAAGGGATGGCTTTAACCTCACATTAAAAATAAATCTGTCAAAGCTTCCGGCAAATCAAGgtacaacgaagttctgtcaaaaaaaaaaaaaccactta--atcattgtgc--attcatgtatggatccttttcctca-actcctttgtacaatggtctttgattacctgatgaccacaccccattgaagtttaactttatctattcatttatatag
upper sequence: Vv01s0011g05400.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA08G32790.1 (Glycine max), 5'ss of exon 3
AAAGCTTCATATGGTGTACTCGTACAAATTCTTGATCCTCCAAAAGACGGCTTCAATCTCACATTGAAACTGAATTTGTCAAAACTTCCTCCAGATGAAGgttcaacaagtttcttttctaaggtcattatgagcttgccatggctatgctgaaacatataggaacagtttgtcacacattttcatctacataactactc
|||||| |||||||| || || ||||||||||||||||||| || ||||| ||||||||||| ||| | ||| |||| || ||||| || || ||||| || || |||| | || | | | | ||| |||| | | || | | | | ||| |||| | || | ||
AAAGCTGCATATGGTAATCTTGTGCAAATTCTTGATCCTCCAAGGGATGGCTTTAATCTCACATTAAAAATAAATCTGTCTAAGCTTCCAGCAAATCAAGgtacagagagcttctgtataaaatgccatcttaactttccattccccttctagcagaagtttttcctctttaagttgaatttagaagctgctatattttcMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110361352|gb|EC924819.1|EC924819EST: CTTCAATCTCACATTGAAACTGAATTTGTCAAAACTTCCTCCAGATGAAG AGTATAAACATGCTCTCTTGGTAAAGATTGCATCTGTAAGGGAAGTGGTAC
genomic: CTTCAATCTCACATTGAAACTGAATTTGTCAAAACTTCCTCCAGATGAAGgttcaacaag ... atctatgcagAGTATAAACATGCTCTCTTGGTAAAGATTGCATCTGTAAGGGAAGTGGTAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAAGCTTCATATGGTGTACTCGTACAAATTCTTGATCCTCCAAAAGACGGCTTCAATCTCACATTGAAACTGAATTTGTCAAAACTTCCTCCAGATGAAGgttcaacaagtttcttttctaaggtcattatgagcttgccatggctatgctgaaacatataggaacagtttgtcacacattttcatctacataactactc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggaaca