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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTACGTGGCAACTAGATGGTATCGTGCTCCTGAACTCTGTGGTTGCTTTTTCTCCAAAgtaagcttatgtaatctagggcttttgtgacagtttgtggtttcagttgcatttgtctgtatgtatcttttactttgttggattatcctcttttatattt...

Basic information

species Vitis vinifera
transcript Vv01s0011g04920.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g04920.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os05g50120.1 (Oryza sativa), 5'ss of exon 4
GATTACGTGGCAACTAGATGGTATCGTGCTCCTGAACTCTGTGGTTGCTTTTTCTCCAAAgtaag------cttatgtaatctaggg-------------cttttgtgacagt-ttgtggtttca----gttgcatttgtctgtatgtatcttttactttgttggattatcctcttttatattt------------------------------------------------
||||| ||||||||||||||||||||||| || ||  | ||||| | |||||| || || |||||         || |||  | | |              |||| |  ||   ||||  | | |    | |   ||||  |  ||||| |       || |  || | | |||||  | |||                                                 
GATTATGTGGCAACTAGATGGTATCGTGCCCCAGAGTTGTGTGGCTCCTTTTTTTCAAAGgtaagggaatttccatttaacatggtgatggctatattattttttcttccaacattgttatattactatgatatgtttggatcaatgtagcaacagtgttttgagaatgttctcttagacattgtcgcattaggtgatatcttgatttatattttgtcattggcttttgcag

upper sequence: Vv01s0011g04920.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G062761_T02 (Zea mays), 5'ss of exon 4
GATTACGTGGCAACTAGATGGTATCGTGCTCCTGAACTCTGTGGTTGCTTTTTCTCCAAAgtaagcttatgtaatctagggcttttgtgacagtttgtggtttcagttgcatttgtctgtatgtatcttttacttt-gttggattatcctcttttatattt-----
||||||||||| |||||||||||||| ||||| ||| | ||||| | |||||| || || || |   | | | | ||  |  |    |  |  |      | ||| | | |||| ||  | || |  | |||| || ||| ||| |   |   |   |  |     
GATTACGTGGCCACTAGATGGTATCGAGCTCCAGAATTATGTGGCTCCTTTTTTTCAAAGgtga---tgtctcaacttagcttcaatttgcgatcaaca-tatcaat-gtatttttcc-tctgaaattgttacattagtttgataagtttggatccaacatagcga

upper sequence: Vv01s0011g04920.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT1G18150.3 (Arabidopsis thaliana), 5'ss of exon 5
GATTACGTGGCAACTAGATGGTATCGTGCTCCTGAACTCTGTGGTTGCTTTTTCTCCAAAgtaagcttatgt------aatctagggcttttgtgacagtttgtggtttcagttgcatttgtctgtatgtatctttt-----actttgttggattatcctcttttatattt-----------------------------------------------
||||| || || ||| | ||||||||||| |||||||||||||| |  ||||||||||||||||| || | |      || |        |  ||  | ||     |  |||    ||   |||   | | | ||||     |  ||||||  |  | || |  | |  ||                                               
GATTATGTAGCTACTCGGTGGTATCGTGCCCCTGAACTCTGTGGATCGTTTTTCTCCAAAgtaagattctttttcaccaaacccaactactcttgctatttctccctaccaggaaaatgcttctagttttctattttgtagaatattgttgtgtggttctatagtgttgttgagaagaccagccatctcaagctaagtctactcttgttatatttcag

upper sequence: Vv01s0011g04920.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT1G73670.1 (Arabidopsis thaliana), 5'ss of exon 4
GATTACGTGGCAACTAGATGGTATCGTGCTCCTGAACTCTGTGGTTGCTTTTTCTCCAAAgtaagcttatgtaatctagggcttttgtgacagtttgtggtttcagttgcatttgtctgtatgtatcttttactttgttggattatcctcttttatattt
||||| || || ||| | ||||| ||||| |||||||||||||| |  |||||||| |||||||||||||       ||    || |       ||   |||| | ||   ||       || | ||||  | |   |||   | || |    |||  | 
GATTATGTTGCTACTCGGTGGTACCGTGCCCCTGAACTCTGTGGATCATTTTTCTCAAAAgtaagcttataactctcagaagattggacttctattactgtttaatttcttttacgtctcatttttcttccaatcctttgatatctcttagaatatgatg