1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTGTTTGACACTAGAACAACAGATGTTCTGTGTACTGGAGACAAAAGTGTCATCAAGGAAGGACATAAAAGTTTCCCTAGTGGGCATACTTCTTgtaagtgacctattactgtgggaactgtatgctgtgtatcaatatatggttcctgttgctagtttccggagcatttcttttttcatgcatgaatacatga...
species | Vitis vinifera |
transcript | Vv01s0011g04180.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GTGTCATCAAGGAAGGACATAAAAGTTTCCCTAGTGGGCATACTTCTT GGTCCTTTGCCGGACTCAGCTTCCTCTCATGGTACTTGTCAGGCAAAATCAEST: gi|110423411|gb|EC989757.1|EC989757
genomic: GTGTCATCAAGGAAGGACATAAAAGTTTCCCTAGTGGGCATACTTCTTgtaagtgacc ... tcatgtgcagGGTCCTTTGCCGGACTCAGCTTCCTCTCATGGTACTTGTCAGGCAAAATCA
EST: AAGTGTCATCAAGGAAGGACATAAAAGTTTCCCTAGTGGGCATACTTCTT GGTCCTTTGCCGGACTCAGCTTCCTCTCATGGTACTTGTCAGGCAAAATCAEST: gi|77588556|gb|DV223493.1|DV223493
genomic: AAGTGTCATCAAGGAAGGACATAAAAGTTTCCCTAGTGGGCATACTTCTTgtaagtgacc ... tcatgtgcagGGTCCTTTGCCGGACTCAGCTTCCTCTCATGGTACTTGTCAGGCAAAATCA
EST: AAGTGTCATCAAGGAAGGACATAAAAGTTTCCCTAGTGGGCATACTTCTT GGTCCTTTGCTGGACTCAGTTTCCTCTCATGGTACTTGTCAGGCAAAATCAEST: gi|110380481|gb|EC945749.1|EC945749
genomic: AAGTGTCATCAAGGAAGGACATAAAAGTTTCCCTAGTGGGCATACTTCTTgtaagtgacc ... tcatgtgcagGGTCCTTTGCCGGACTCAGCTTCCTCTCATGGTACTTGTCAGGCAAAATCA
EST: AAGTGTCATCAAGGAAGGACATAAAAGTTTCCCTAGTGGGCATACTTCTT GGTCCTTTGCTGGACTCAGTTTCCTCTCATGGTACTTGTCAGGCAAAATCA
genomic: AAGTGTCATCAAGGAAGGACATAAAAGTTTCCCTAGTGGGCATACTTCTTgtaagtgacc ... tcatgtgcagGGTCCTTTGCCGGACTCAGCTTCCTCTCATGGTACTTGTCAGGCAAAATCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTTTGACACTAGAACAACAGATGTTCTGTGTACTGGAGACAAAAGTGTCATCAAGGAAGGACATAAAAGTTTCCCTAGTGGGCATACTTCTTgtaagtgacctattactgtgggaactgtatgctgtgtatcaatatatggttcctgttgctagtttccggagcatttcttttttcatgcatgaatacatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgggaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaataca