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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTATGCTGTTCTGTTGCCGATTGTCATTTTTATTCTATTCTATCTTCGTAGGAGGGATGTATATGATCTGCACCACAGCATACTAGgtactattatatatataaaaccccaaggggataattttttttgctcctatttaaaggaagtgcctatgaaggtactgctgactgatatgaattcacgaaagcag

Basic information

species Vitis vinifera
transcript Vv01s0011g04160.t01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110364780|gb|EC928276.1|EC928276
EST:     ATTCTATCTTCGTAGGAGGGATGTATATGATCTGCACCACAGCATACTAG                         GCCTCTTATTTTCTGTGCTGATCACTGCGGTTATCACGGATGCAATAAAAG
genomic: ATTCTATCTTCGTAGGAGGGATGTATATGATCTGCACCACAGCATACTAGgtactattat ... acgaaagcagGCCTCTTATTTTCTGTGCTGATCACTGCGGTTATCACGGATGCAATAAAAG
EST: gi|71857050|gb|DT006105.1|DT006105
EST:     ATTCTATCTTCGTAGGAGGGATGTATATGATCTGCACCACAGCATACTAG                         GCCTCTTATTTTCTGTGCTGATCACTGCGGTTATCACGGATGCAATAAAAG
genomic: ATTCTATCTTCGTAGGAGGGATGTATATGATCTGCACCACAGCATACTAGgtactattat ... acgaaagcagGCCTCTTATTTTCTGTGCTGATCACTGCGGTTATCACGGATGCAATAAAAG
EST: gi|71856392|gb|DT005447.1|DT005447
EST:     ATTCTATCTTCGTAGGAGGGATGTATATGATCTGCACCACAGCATACTAG                         GCCTCTTATTTTCTGTGCTGATCACTGCGGTTATCACGGATGCAATAAAAG
genomic: ATTCTATCTTCGTAGGAGGGATGTATATGATCTGCACCACAGCATACTAGgtactattat ... acgaaagcagGCCTCTTATTTTCTGTGCTGATCACTGCGGTTATCACGGATGCAATAAAAG