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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTATCCAGGTTTTGGTCTATCTGACGGATTACACGGTTATATCTCAAGCTTTGATGAGCTAGTTGATGATGTTATTGACCATTATACAAAAATCAAAGgtatggtattcaagtactgcctgttatcataatcacatcactataatcttgcttgtacattattccatctattgacttagcatatcaaatgctgttcctgatcttgttcatttatgactggtag

Basic information

species Vitis vinifera
transcript Vv01s0011g03620.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g03620.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA20G25020.2 (Glycine max), 5'ss of exon 3
GACTATCCAGGTTTTGGTCTATCTGACGGATTACACGGTTATATCTCAAGCTTTGATGAGCTAGTTGATGATGTTATTGACCATTATACAAAAATCAAAGgtatggtattcaagtactgcctgttatcataatca-catcactataatcttgcttgtacattattccatctattgacttagcatatcaaatgctgttcctgatcttgttcatttatgactggtag
|||||||||||||||||||||||||| || ||||| ||||| ||  |||  ||||||||  | |||||||| ||||| || |||| |||||||||||||||||     ||  || |   |  | | ||| | | | |||   | |||||||  || ||  | |    |   | ||   ||   |      || || || ||  |||  | ||| |  | ||  ||
GACTATCCAGGTTTTGGTCTATCTGAAGGTTTACATGGTTACATACCAAATTTTGATGATTTGGTTGATGACGTTATAGAACATTTTACAAAAATCAAAGgtaaaaccttttagcatc-ctggctgtcacattgatcattgttgtaatctt--ttatatgtgaaagtacagaatgttgtattgt------tgttgatcatg--ctttgtaattca--attgacag

upper sequence: Vv01s0011g03620.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA01G19820.1 (Glycine max), 5'ss of exon 4
GACTATCCAGGTTTTGGTCTATCTGACGGATTACACGGTTATATCTCAAGCTTTGATGAGCTAGTTGATGATGTTATTGACCATTATACAAAAATCAAAGgtatggtattcaagtactgcctgttatcataatcacatcactataatcttgcttgtacattattccatctattgacttagcatatcaaatgctgttcctgatcttgttcatttatgactggtag
|||||||||||||||||||| || || ||||| || ||||||||  |||  |||||| | || |||||||||||||| || |||||||||||||| |||||| ||   ||     |||      ||||   ||    |||   | || ||  ||||| ||  ||  ||         ||  | |    ||| | ||  | || || |  ||||   | ||  ||
GACTATCCAGGTTTTGGTCTTTCAGAAGGATTGCATGGTTATATACCAAAATTTGATTATCTGGTTGATGATGTTATAGAGCATTATACAAAAATTAAAGgtgtgtcttttt--cacttttcagtatcc--atggtgtcatattgatatttgttgta-atatttttatgc-------taaaagaaatgatgttattgatcatgttttgtattt-caattgacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110689348|gb|EE065495.1|EE065495
EST:     CTTTGATGAGCTAGTTGATGATGTTATTGACCATTATACAAAAATCAAAG                         GAAGACCAGAATTGAGAGGGTTGCCTCACTTTATATTGGGGCAATCAATGG
genomic: CTTTGATGAGCTAGTTGATGATGTTATTGACCATTATACAAAAATCAAAGgtatggtatt ... tgactggtagGAAGACCAGAATTGAGAGGGTTGCCTCACTTTATATTGGGGCAATCAATGG
EST: gi|71870300|gb|DT019355.1|DT019355
EST:     CTTTGATGAGCTAGTTGATGATGTTATTGACCATTATACAAAAATCAAAG                         GAAGACCAGAATTGAGAGGGTTGCCTCACTTTATATTGGGGCAATCAATGG
genomic: CTTTGATGAGCTAGTTGATGATGTTATTGACCATTATACAAAAATCAAAGgtatggtatt ... tgactggtagGAAGACCAGAATTGAGAGGGTTGCCTCACTTTATATTGGGGCAATCAATGG