Sequence
atgc intronic sequence ATGC exonic sequenceTTCATTGATGAAGTCTCTACGATATGCTGTGACAACATCTTTTGGCAGCATCTGCTATGGATCATTGTTTACAGCTGCAATAAGGGCATTGCGATGGGAGgtacacatgccagtgcttgtttttctattaatcggcccactgattttatctcacatttgattgatgtttgtaatatggacttgattatatggtaaggtttatttatcaaatattatctttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0011g03220.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM5G896337_T01 (Zea mays), 5'ss of exon 3
TTCATTGATGAAGTCTCTACGATATGCTGTGACAACATCTTTTGGCAGCATCTGCTATGGATCATTGTTTACAGCTGCAATAAGGGCATTGCGATGGGAGgtacacatgccagtgcttgtttttctattaatcggcccactgattttatctcacatttgattgatgtttgtaatatggacttgattatatggtaaggtttatttatcaaatattatctttcag
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ACCTCTTCTGAAATCTCTTCAGTATGCTGTGACAACTTCATTTGGAAGCATTTGCTATGGATCGCTTTTTACCGCTGCTATTAGGACTTTGCGATGGGAGgtttgcatcttactccctctttct-----agagggttttc--gttgtgcaccact----attaaagtttgcaatttcatttcatacaggccattaaaaaaattgatcagtc------------
upper sequence: Vv01s0011g03220.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA01G21270.3 (Glycine max), 5'ss of exon 2
TTCATTGATGAAGTCTCTACGATATGCTGTGACAACATCTTTTGGCAGCATCTGCTATGGATCATTGTTTACAGCTGCAATAAGGGCATTGCGATGGGAGgtacacatgccagtgcttgtttttctattaatcggcccac-tgattttatctcacatttgattgatgtttgtaatatggacttgattatatggtaaggtttatttatcaaatattatctttcag
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CTCCTTTATGAAATGTCTACAATATGCTTTAACGACTTCTTTTGGGAGCATTTGTTATGGTTCATTATTCACAGCTGCAATTAGGACACTGCGATGGGAGgtac-tat-cgaccacttgctttt-tgtgaattacttcatgttcatttcctttatatatggaagctatctgt----tagacctc-ttataaag-aatgtttaggggggg---------------
upper sequence: Vv01s0011g03220.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA20G24760.1 (Glycine max), 5'ss of exon 4
TTCATTGATGAAGTCTCTACGATATGCTGTGACAACATCTTTTGGCAGCATCTGCTATGGATCATTGTTTACAGCTGCAATAAGGGCATTGCGATGGGAGgtacacatgccagtgcttgtttttctattaatcggcccactgattttatctcacatttgattgatgtttgtaatatggacttgattatatggtaaggtttatttatcaaatattatctttcag
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CTCCTTAATGAAATCTCTACAGTATGCTTTAACAACATCTTTTGGCAGCATTTGTTATGGTTCATTATTTACTGCAGCTATTAGGACACTACGGTGGGAGgta-----accaatcattatggccaatttga--agttcatttccttcattt--------atggaggcttttattttc-attttttcttctattaaaattt--tgat------ttgtctttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110362607|gb|EC926152.1|EC926152EST: TCTGCTATGGATCATTGTTTACAGCTGCAATAAGGGCATTGCGATGGGAG ATTAGGGGATTCCGGTCTAAGATTGGCAACAATGAGTGTTTGCTTTGTTGT
genomic: TCTGCTATGGATCATTGTTTACAGCTGCAATAAGGGCATTGCGATGGGAGgtacacatgc ... tatctttcagATTAGGGGATTCCGGTCTAAGATTGGCAACAATGAGTGTTTGCTTTGTTGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTCATTGATGAAGTCTCTACGATATGCTGTGACAACATCTTTTGGCAGCATCTGCTATGGATCATTGTTTACAGCTGCAATAAGGGCATTGCGATGGGAGgtacacatgccagtgcttgtttttctattaatcggcccactgattttatctcacatttgattgatgtttgtaatatggacttgattatatggtaaggtttatttatcaaatattatctttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC