Sequence
atgc intronic sequence ATGC exonic sequenceGCAAAAACCACCAAGAAGATAGTACTGAGGTTGCAATGCCAGGGCTGCAAACACGTATCCCAGCATCCAATCAAGgtcatatctcaaacttaaatcgcttatttgttttcttggtccctcctcattcctagtgaacacctaggacttgtttggcaatcttttcaaaaaccattct...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0011g02080.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os07g33880.1 (Oryza sativa), 5'ss of exon 3
GCAAAAACCACCAAGAAGATAGTACTGAGGTTGCAATGCCAGGGCTGCAAACACGTATCCCAGCATCCAATCAAGgtcatatctcaaacttaaatcgcttatttgttttcttggtccctcctcattcctagtgaacacctaggacttgtttggcaatcttttcaaaaaccattct------
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GCAAAAACCACCAAGAAGATCGTGCTGAAGCTGCAATGCCAAAGCTGCAAGCATTACTCCCAGCACCCCATCAAGgtattatttcattgtcaagactccaga--gct------gaaaattatcatgaatcattattttgctggatgtgttggatgctcacttgcataattgttctctgcag
upper sequence: Vv01s0011g02080.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os07g33921.1 (Oryza sativa), 5'ss of exon 3
GCAAAAACCACCAAGAAGATAGTACTGAGGTTGCAATGCCAGGGCTGCAAACACGTATCCCAGCATCCAATCAAGgtcatatctcaaacttaaatcgctta--tttgttttcttggtccctcctcattcctagtgaacacctagga--cttgtttg-gcaatcttttcaaaaaccattct
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GCAAAAACCACCAAGAAGATCGTGCTGAAGCTGCAATGCCAAAGCTGCAAGCATTACTCCCAGCACCCCATCAAGgtattatttcattgtcaagactccagagctgaaaattatcatgaatcattattt-tgctggatgtgttggatgctcacttgcataattgttctctgcagag----
upper sequence: Vv01s0011g02080.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os07g33898.1 (Oryza sativa), 5'ss of exon 3
GCAAAAACCACCAAGAAGATAGTACTGAGGTTGCAATGCCAGGGCTGCAAACACGTATCCCAGCATCCAATCAAGgtcatatctcaaacttaaatcgcttatttgttttcttggtccctcctcattcctagtgaacacctaggacttgtttggcaatcttttcaaaaaccattct------
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GCAAAAACCACCAAGAAGATTGTGCTGAAGCTGCAATGCCAAAGCTGCAAGCATTACTCCCAGCACCCCATCAAGgtattatttcattgtcaagactcaagctgaaaatt---gtcatgaatcaatc--agt-atctttttagatgtgttgggtgctatcttacattattattctttacag
upper sequence: Vv01s0011g02080.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os07g33860.1 (Oryza sativa), 5'ss of exon 3
GCAAAAACCACCAAGAAGATAGTACTGAGGTTGCAATGCCAGGGCTGCAAACACGTATCCCAGCATCCAATCAAGgtcatatctcaaacttaaatcgcttatttgttttcttggtccctcctcattcctagtgaacacctaggacttgtttggcaatcttttcaaaaaccattct------
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GCAAAAACCACCAAGAAGATTGTGCTGAAGCTGCAATGCCAAAGCTGCAAGCATTACTCCCAGCACCCCATCAAGgtatttttgcaatgtgaag------attcaagctgaaaattc-tcatgaatc--agt-atctttttagatgtgttggatgctcacttacataattattctgtgcag
upper sequence: Vv01s0011g02080.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA15G05670.1 (Glycine max), 5'ss of exon 3
GCAAAAACCACCAAGAAGATAGTACTGAGGTTGCAATGCCAGGGCTGCAAACACGTATCCCAGCATCCAATCAAGgtca-tatctcaaacttaaatcgcttatttgttttcttggtccctcctcattcctagtgaacacctaggacttgtttggcaatcttttcaaaaaccattct
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GCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAGCATGTCTCCCAACACGCTATTAAGgttagtatatggaaagcaa------tggatgcttttttggttccatgtggtgtgtggctaatggttgttagtt-cctgtctatgttgtgcag---------
upper sequence: Vv01s0011g02080.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA08G19320.2 (Glycine max), 5'ss of exon 3
GCAAAAACCACCAAGAAGATAGTACTGAGGTTGCAATGCCAGGGCTGCAAACACGTATCCCAGCATCCAATCAAGgtca-tatctcaaacttaaatcgcttatttgttttcttggtcc--ctcctcattcctagtgaacacctaggacttgtttggcaatcttttcaaa-----aaccattct------------------
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GCTAAGACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAGCATGTCTCCCAACACGCTATTAAGgttagtatatggtaaacaaaacaatggtttaaagtggttgtttggcatgtgctgtgtggctaatggtttgttcctgtctatgttgttgtgcagaggtgcaagcactttgagattggtggtgacaag
upper sequence: Vv01s0011g02080.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA08G19320.1 (Glycine max), 5'ss of exon 3
GCAAAAACCACCAAGAAGATAGTACTGAGGTTGCAATGCCAGGGCTGCAAACACGTATCCCAGCATCCAATCAAGgtca-tatctcaaacttaaatcgcttatttgttttcttggtccctcctcattcctagtgaacacctaggacttgtt--tggcaatcttttcaaaaaccattct
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GCTAAGACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAGCATGTCTCCCAACACGCTATTAAGgttagtatatggtaaacaaaacaatggtttaaagt---ggttgtttggcatgtgctgtgtg-gctaatggtttgttcctgtctatgttgttgtgcag------
upper sequence: Vv01s0011g02080.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: PP1S115_63V6.1 (Physcomitrella patens), 5'ss of exon 4
GCAAAAACCACCAAGAAGATAGTACTGAGGTTGCAATGCCAGGGCTGCAAACACGTATCCCAGCATCCAATCAAGgtca-ta---tctcaaactta-aatcgcttatttgttttcttgg-----tccctcctcattcctagtgaacacctaggacttgtttggcaatcttttcaaaaaccattct
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GCTAAGACCACGAAGAAGATTGTGCTTAGGTTGCAATGCCAGGCCTGCAAGCACGTGACACAACATCCTATCAAGgtaagtaagttctcgtcctttcgagggctcgtctgtttctgacgaggattaccttggaagtcttggtcatcagctatctcatatttaatgagttattttc----------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|34319843|gb|CF372597.1|CF372597EST: TGAGGTTGCAATGCCAGGGCTGCAAACACGTATCCCAGCATCCAATCAAG AGGTGCAAGCACTTTGAGATCGGTGGCGATAAGAAGGGGAAGGGCACTTCT
genomic: TGAGGTTGCAATGCCAGGGCTGCAAACACGTATCCCAGCATCCAATCAAGgtcatatctc ... gattttgcagAGGTGCAAGCACTTTGAGATCGGTGGCGATAAGAAGGGGAAGGGCACTTCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCAAAAACCACCAAGAAGATAGTACTGAGGTTGCAATGCCAGGGCTGCAAACACGTATCCCAGCATCCAATCAAGgtcatatctcaaacttaaatcgcttatttgttttcttggtccctcctcattcctagtgaacacctaggacttgtttggcaatcttttcaaaaaccattct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaaaac