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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGGATGGACTCAGGGAACCCATTGTTAAGTTCAAAAGATGGGAAAGATGTTCTTGAGACTGGTCGGCTTTTTGTCCGTAATCTTCCATATACTGCAACgtactgatccttgctccctctttgcttttttcttttttcctttttctttttgggtgtatactgcaatatatttttggtaaagtgtaagataaattcatttgtgttgccatttttttattctaattggatttatgtttttcttataacttctgagtcctgattccttaaatgttcttgatgttattcag

Basic information

species Vitis vinifera
transcript Vv01s0011g01060.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g01060.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT4G19610.1 (Arabidopsis thaliana), 5'ss of exon 4
-AAAGGATGGACTCAGGGAACCCATTGTTAAGTTCAAAAGATG---GGAAAGATGTTCTTGAGACTGGTCGGCTTTTTGTCCGTAATCTTCCATATACTGCAACgtactgatccttgctccctctttgcttttttcttttttcctttttctttttgggtgtatactgcaatatatttttggtaaagtgtaagataaattcatttgtgttgccatttttttattctaattggatttatgtttttcttataacttctgagtcctgattccttaaatgttcttgatgttattcag
 | | | ||    || ||   |       |   || |||| ||   |  | ||||||||||| |||||||| ||||| |||||||| || || || |||||||||||||    ||| ||   || |  | |     | |||||  |||   |||  | | |  |    | || || | || |    ||| | ||||  ||||     | |                                                                                  
TAGAAGGTGATGGCAAGGTGGCT----CAAGAATCGAAAGCTGTCAGTGATGATGTTCTTGACACTGGTCGCCTTTTCGTCCGTAACCTGCCTTACACTGCAACgtactagatctt-cttgttcatctcatacacttgttttctgtttatctttctgttattcatctta-tacatctctgattgt-tgtca-ataatctcatgca-atag----------------------------------------------------------------------------------

upper sequence: Vv01s0011g01060.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: PP1S42_20V6.1 (Physcomitrella patens), 5'ss of exon 4
--AAAGGATGGACTCAGGGAACCCATTGTTAAGTTCAAAAGATGGGAAAGATGTTCTTGAGACTGGTCGGCTTTTTGTCCGTAATCTTCCATATACTGCAACgtactgatccttgctccctctttgctt-ttttcttttttcctttttctttttgggtgtatactgcaatatatttttggtaaagtgtaagataaattcatttgtgttgccatttttttattctaattggatttatgtttttcttataacttctgagtcctgattccttaaatgttcttgatgttattcag
   | ||     | || | | | |   |||  |    ||      |||||  |||   || |||||||| || ||||||||||||||||| ||||| ||||||||      |||| | |    |      || ||   ||||||| | ||        | ||   | ||| | ||  || ||   | |  | |    | |||                                                                                         
CTGAGGGCGACGCACATGTAGCGC-CAGTTTTGGCTGAAGAGCAAGAAAG-CGTTTCCGAAACTGGTCGACTCTTTGTCCGTAATCTTCCGTATACAGCAACgtaagtcatcttgttgcaaagtactacgttctccactttccttgtactgcccatacg-attgagtaatctcttagtgatagtatctgggctccgattattg----------------------------------------------------------------------------------------