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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCCAAGTATGCAGTAAAATATCATACTGCTGCAGAGAATGCTTTGAGTCACTGCTATCGGTCTTGCCTTGAACTTCTTATAGAAAATGGCCTTCAGAGgttggttgctatcagatgttacattcatttctttcttgtatagattgttcatcacttgttacctttttttttttcttaatgaacgggaatttagtttaattgacatttttggatgcag

Basic information

species Vitis vinifera
transcript Vv01s0011g00870.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g00870.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os10g30750.1 (Oryza sativa), 5'ss of exon 4
GTCCCAAGTATGCAGTAAAATATCATACTGCTGCAGAGAATGCTTTGAGTCACTGCTATCGGTCTTGCCTTGAACTTCTTATAGAAAATGGCCTTCAGAGgttggt-tgctatcagatg--ttacattcatttctttcttgtatagattgttcatcacttgttacctttttttttttcttaatgaacgggaatttagtttaattgacatttttggatgcag---------------
| ||||| ||||| || || ||||| || ||||||||||||||  | ||||||||||| || |||||  | ||||| || || |||||||||||| | ||||   | |   |||   ||  | | |||| ||  |   | ||  | ||  ||| |   ||   |  | |    |  |  |  ||||        |  | | | | |  | |||  ||                   
GCCCCAAATATGCTGTCAAGTATCACACAGCTGCAGAGAATGCACTTAGTCACTGCTACCGTTCTTGTTTGGAACTCCTCATTGAAAATGGCCTTGAAAGgtacttgtataatcgtgtggatcaaattctttaatccgtagttaacatcattcctagtttaacatgtatgcactgctggttttgaatcaacgcatgctgttagtaatttcttttaattggtcttttatttcattag

upper sequence: Vv01s0011g00870.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM5G836588_T01 (Zea mays), 5'ss of exon 4
GTCCCAAGTATGCAGTAAAATATCATACTGCTGCAGAGAATGCTTTGAGTCACTGCTATCGGTCTTGCCTTGAACTTCTTATAGAAAATGGCCTTCAGAGgt-tggttgctatcagat--gttacattcatttctt--tcttgtatagattgttcatcacttg-ttacctttttttttttcttaatgaacgggaatttagtttaattgacatttttggatgcag---
| ||||| ||||| || || ||||| || ||||||||||||||  | ||||||||||||||||| ||| | ||||| || || || ||||| ||| | ||||     |   |||| ||   ||| ||  | ||  |  | ||   | ||    | ||   | | | | | | |||    | || |           |||||   |||    ||  |   | ||    
GCCCCAAATATGCTGTCAAGTATCACACAGCTGCAGAGAATGCACTTAGTCACTGCTATCGGTCCTGCTTGGAACTGCTCATTGAGAATGGTCTTGAAAGgtacacgtaggatcatattgcttaaatctagttgctaattttagtttgacaaatgatgtttgggtcatcctgtttcacatattgaactttatattattagtaatatttctgttgcttatttcattag

upper sequence: Vv01s0011g00870.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA20G03330.1 (Glycine max), 5'ss of exon 5
GTCCCAAGTATGCAGTAAAATATCATACTGCTGCAGAGAATGCTTTGAGTCACTGCTATCGGTCTTGCCTTGAACTTCTTATAGAAAATGGCCTTCAGAGgttggttgc----tatcagatgttacattcatttctttcttgtatagattgttcatcacttgttacctttttttttttcttaatgaacgggaatttagtttaattgacatttttggatgcag
| || ||||||||  |||| || |||| |||||||||||||||||| ||||| |||||||| |||||| | || ||||| || |||||||| ||||| |||||   |||    |  || |||||  |||  ||| || |||  ||      || ||   ||    | |   |    | |||||  ||     | ||| |||  ||| ||| | |  ||| ||
GCCCAAAGTATGCTATAAAGTACCATAATGCTGCAGAGAATGCTTTAAGTCATTGCTATCGTTCTTGCTTGGAGCTTCTGATTGAAAATGGGCTTCAAAGgttccctgccccctcccaaatgttttattgtttttttccttacat------tttattgtttt---catgaatgccatgcttaa--aattctgacttactttttttggcatgtatttatgtag

upper sequence: Vv01s0011g00870.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA02G12670.1 (Glycine max), 5'ss of exon 5
GTCCCAAGTATGCAGTAAAATATCATACTGCTGCAGAGAATGCTTTGAGTCACTGCTATCGGTCTTGCCTTGAACTTCTTATAGAAAATGGCCTTCAGAGgttggttgctatcagatgttacattcatttctttcttgtatagattgttcatcacttgttacctttttttttttcttaatgaacgggaatttagttta--attgacatttttggatgcag
| || ||||||||    || || || |||||||||||||||||||| || || |||||||| |||||||| |||||| | || ||  |||| ||| | |||||  ||| | |||||||||| |     |    | || |  | |  |||  | |   |  | ||    |     ||||| || |   || ||  |||    ||| ||| | | ||| |||
GCCCAAAGTATGCTTCGAAGTACCAAACTGCTGCAGAGAATGCTTTAAGCCATTGCTATCGTTCTTGCCTAGAACTTTTAATTGATCATGGGCTTAAAAGgtt--ttgtt-tcagatgttataagttataacgttttcttgaaacagtttgttag--ggcatctcccatgcagccttaaagatctaaaacttgcttttttgttggcatatattgat-cag

upper sequence: Vv01s0011g00870.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA01G06730.1 (Glycine max), 5'ss of exon 5
GTCCCAAGTATGCAGTAAAATATCATACTGCTGCAGAGAATGCTTTGAGTCACTGCTATCGGTCTTGCCTTGAACTTCTTATAGAAAATGGCCTTCAGAGgttggttgctatcagatgttacattcatttctttcttgtatagattgttcatcacttgttacctttttttttttcttaatgaacgggaatttagttta--attgacatttttggatgcag
| || ||||||||    || || || ||||||||||||||||| || || || |||||||| |||||||| |||||| | || ||  |||| ||| | |||||  ||  | |||||||||| |  ||||  ||||||| |    || ||        || | ||    |     ||||| || |   || ||  |||    ||| ||| | | ||| |||
GCCCAAAGTATGCTTCGAAGTACCAAACTGCTGCAGAGAATGCCTTAAGCCATTGCTATCGTTCTTGCCTAGAACTTTTAATTGATCATGGGCTTAAAAGgtt--tttgtttcagatgttataa-cattgttttcttgaaacagttttttg------gtcatctcccatgcagccttaaagatctaaaacttgcttttttgttggcatatattgat-cag

upper sequence: Vv01s0011g00870.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT1G69340.1 (Arabidopsis thaliana), 5'ss of exon 5
GTCCCAAGTATGCAGTAAAATATCATACTGCTGCAGAGAATGCTTTGAGTCACTGCTATCGGTCTTGCCTTGAACTTCTTATAGAAAATGGCCTTCAGAGgttggt----tgctatcagatgttacattcatttctttcttgta--tagattgt-tcatcacttgttacctttttttttttcttaatgaacgggaatttagtttaattgacatttttggatgcag
| ||||||||||||||||| |||||||| ||||| ||||||||| | |||||||||||| | ||||| || |||||||| ||||| | ||| || || ||||  ||    ||  ||   |  ||    | |||| |||     |   | ||| | |  |   ||  |   | | ||| | || | |      | | || | |||  |   |||       |||||
GACCCAAGTATGCAGTAAAGTATCATACAGCTGCTGAGAATGCTCTAAGTCACTGCTATAGATCTTGTCTGGAACTTCTCATAGATAGTGGGCTACAAAGgtgtgtgaagtgaaattctagttttttcttatttttttgcaacaatcaaattctattgtagttttgtgattatctttgtatcctgaactcaagaacttgattttggtctgcatacaacattgcag

upper sequence: Vv01s0011g00870.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: PP1S37_110V6.1 (Physcomitrella patens), 5'ss of exon 5
GTCCCAAGTATGCAGTAAAATATCATACTGCTGCAGAGAATGCTTTGAGTCACTGCTATCGGTCTTGCCTTGAACTTCTTATAGAAAATGGCCTTCAGAGgttggttgct---atcagatgttacattcatttctttcttgtatagattgttcatcacttgttacctttttttttttcttaatgaacgggaatttagtttaattgacatttttggatgcag
| || |  ||||||| |   || || || || || |||||||| ||||||||||||||||| || ||||| ||||||||||| ||  | |  |||   ||||| | |  |    |||  |||   ||   |||  ||  |  |   | | ||      || |  |  |  | |||| ||||||  |     ||  | | ||                    
GACCTAGATATGCAGCACGGTACCACACAGCAGCTGAGAATGCATTGAGTCACTGCTATCGTTCATGCCTGGAACTTCTTATCGAGCAAGAACTTTCCAGgttaggtttttgagtcacttgtaggatgagttttattgcttcagttagttttggggggttttatctatcatcttttacttaatata---atatcaactctagg------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110698158|gb|EE075402.1|EE075402
EST:     CACTGCTATCGGTCTTGCCTTGAACTTCTTATA-AAAATGGCCTTCAGAG                         CATTGCTATGGGCTGCATATATACAGACGCTAAAAATTATCCTCGGGA
genomic: CACTGCTATCGGTCTTGCCTTGAACTTCTTATAGAAAATGGCCTTCAGAGgttggttgct ... ttggatgcagCATTGCTATGGGCTGCATATATACAGAGGCTAAAAATTATCCTCGGGA
EST: gi|110698826|gb|EE076764.1|EE076764
EST:     CACTGCTATCGGTCTTGCCTTGAACTTCTTATAGAAAATGGCCTTCAGAG                         CATTGCTATGGGCTGCATATATACAGAGGCTAAAAATTATCCTCGGGAACC
genomic: CACTGCTATCGGTCTTGCCTTGAACTTCTTATAGAAAATGGCCTTCAGAGgttggttgct ... ttggatgcagCATTGCTATGGGCTGCATATATACAGAGGCTAAAAATTATCCTCGGGAACC
EST: gi|161715719|gb|FC067810.1|FC067810
EST:     CACTGCTATCGGTCTTGCCTTGAACTTCTTATAGAAAATGGCCTTCAGAG                         CATTGCGATGGGCTGCATATATACAGAGGCTAAAAATTATCCTCGGGAACC
genomic: CACTGCTATCGGTCTTGCCTTGAACTTCTTATAGAAAATGGCCTTCAGAGgttggttgct ... ttggatgcagCATTGCTATGGGCTGCATATATACAGAGGCTAAAAATTATCCTCGGGAACC