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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACTGCTAACACTGACCTCCCTTCAACCCACCCAATCCGTCTTGGCCTTGCTCTCAACTTCTCTGTCTTCTACTATGAGATAATGAATTCTCCTGAAAGgtaatgcatatgtttcaagcatagcatagactgttcaagccttttaaaagattgttatggcctgatttgagaaatgaaacttttacag

Basic information

species Vitis vinifera
transcript Vv01s0011g00620.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g00620.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA02G12930.1 (Glycine max), 5'ss of exon 4
GCACTGCTAACACTGACCTCCCTTCAACCCACCCAATCCGTCTTGGCCTTGCTCTCAACTTCTCTGTCTTCTACTATGAGATAATGAATTCTCCTGAAAGgtaatgcatatgtt-tcaagcatagcataga-ctgttcaagccttttaaaagattgttatggcctga-tttgagaaatgaaacttttacag
 |||||| ||||| || || || ||||| || |||||||||||||| ||||| ||||| ||||||||||| || |||||||||||||| |||||||||||||||   ||   || ||        | | || |  || ||   ||||    | | | | | | |||| | | |  | ||||||||  ||||
CCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGTCTTGGACTTGCACTCAATTTCTCTGTCTTTTATTATGAGATAATGAACTCTCCTGAAAGgtaagttattgattctctcattcttcgtggatccatttaattgtttttgttgctagctcttgtctgaatatcattactgaaactt--acag

upper sequence: Vv01s0011g00620.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA01G07070.1 (Glycine max), 5'ss of exon 4
GCACTGCTAACACTGACCTCCCTTCAACCCACCCAATCCGTCTTGGCCTTGCTCTCAACTTCTCTGTCTTCTACTATGAGATAATGAATTCTCCTGAAAGgtaatgcatatgtt-tcaagcatagcataga-ctgttcaagccttttaaaagattgttatggcctga-tttgagaaatgaaacttttacag
 |||||| ||||| || || || ||||| || |||||||||||||| ||||| ||||| ||||||||||| || |||||||||||||| |||||||||||||||   |   ||| ||       |||| || |  || ||   ||||    | | | | | | |||| | | |  | ||||||||  ||||
CCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGTCTTGGACTTGCACTCAATTTCTCTGTCTTTTATTATGAGATAATGAACTCTCCTGAAAGgtaagttactggttctctcattctgcatggatccatttaattgtttttgttgctagctcttgtctgaatatcattactgaaactt--acag

upper sequence: Vv01s0011g00620.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA20G03120.1 (Glycine max), 5'ss of exon 4
GCACTGCTAACACTGACCTCCCTTCAACCCACCCAATCCGTCTTGGCCTTGCTCTCAACTTCTCTGTCTTCTACTATGAGATAATGAATTCTCCTGAAAGgtaatgcata-tgtttcaagcatagcatagactgttcaagcct---tttaaaagattgttatg-gcctgatttgagaaatgaaacttttacag-------
  || || | ||| || || || ||||| || |||||||||||||| ||||| ||||||||||| |||||||| ||||||||| |||| ||||||||||||||||   |  | |||      |  | | | |  | ||||| |   |  ||| |||  | |     |  | ||   |  |      ||  | |       
CTACAGCAAGCACAGAGCTTCCATCAACACATCCAATCCGTCTTGGACTTGCGCTCAACTTCTCAGTCTTCTATTATGAGATACTGAACTCTCCTGAAAGgtaattttttctattttttttttctcttggtccatacaagcatagttgcaaaggatcataaaacaacaaactttcaagttattttattctctgttgcaat

upper sequence: Vv01s0011g00620.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA07G35240.1 (Glycine max), 5'ss of exon 4
GCACTGCTAACACTGACCTCCCTTCAACCCACCCAATCCGTCTTGGCCTTGCTCTCAACTTCTCTGTCTTCTACTATGAGATAATGAATTCTCCTGAAAGgtaatgcatatgtttcaag---cat---agcatagactgttcaagccttttaaaagattg-ttatggcctgatttgagaaatgaaacttttacag-----
  ||||| | ||| || || || ||||| || |||||||||||||| ||||| ||||||||||| |||||||| ||||||||| |||| |||||||||||||| |   | | | |   |   |||   ||||| | |      | || |  |||  |     | ||   |  |||      ||   |  ||   |     
CTACTGCAAGCACAGATCTTCCATCAACACATCCAATCCGTCTTGGACTTGCACTCAACTTCTCAGTCTTCTATTATGAGATACTGAACTCTCCTGAAAGgtattttttttttcttttggtccattcaagcattgccgcaaagaaccataaaaacaacaaactttgagttattttattctctgttgccatttggggcctt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349830763|gb|FQ417061.1|FQ417061
EST:     GCTCTCAACTTCTCTGTCTTCTACTATGAGATAATGAATTCTCCTGAAAG                         GGCCTGCCATTTGGCTAAGCAAGCTTTTGATGAGGCAATTGCAGAATTGGA
genomic: GCTCTCAACTTCTCTGTCTTCTACTATGAGATAATGAATTCTCCTGAAAGgtaatgcata ... acttttacagGGCCTGCCATTTGGCTAAGCAAGCTTTTGATGAGGCAATTGCAGAATTGGA
EST: gi|351012160|gb|FQ426882.1|FQ426882
EST:     GCTCTCAACTTCTCTGTCTTCTACTATGAGATAATGAATTCTCCTGAAAG                         GGCCTGCCATTTGGCTAAGCAAGCTTTTGATGAGGCAATTGCAGAATTGGA
genomic: GCTCTCAACTTCTCTGTCTTCTACTATGAGATAATGAATTCTCCTGAAAGgtaatgcata ... acttttacagGGCCTGCCATTTGGCTAAGCAAGCTTTTGATGAGGCAATTGCAGAATTGGA
EST: gi|110373768|gb|EC938103.1|EC938103
EST:     GCTCTCAACTTCTCTGTCTTCTACTATGAGATAATGAATTCTCCTGAAAG                         GGCCTGCCATTTGGCTAAGCAAGCTTTTGATGAGGCAATTGCAGAATTGGA
genomic: GCTCTCAACTTCTCTGTCTTCTACTATGAGATAATGAATTCTCCTGAAAGgtaatgcata ... acttttacagGGCCTGCCATTTGGCTAAGCAAGCTTTTGATGAGGCAATTGCAGAATTGGA
EST: gi|351033251|gb|FQ462023.1|FQ462023
EST:     GCTCTCAACTTCTCTGTCTTCTACTATGAGATAATGAATTCTCCTGAAAG                         GGCCTGCCATTTGGCTAAGCAAGCTTTTGATGAGGCAATTGCAGAATTGGA
genomic: GCTCTCAACTTCTCTGTCTTCTACTATGAGATAATGAATTCTCCTGAAAGgtaatgcata ... acttttacagGGCCTGCCATTTGGCTAAGCAAGCTTTTGATGAGGCAATTGCAGAATTGGA
EST: gi|352789764|gb|FQ478579.1|FQ478579
EST:     GCTCTCAACTTCTCTGTCTTCTACTATGAGATAATGAATTCTCCTGAAAG                         GGCCTGCCATTTGGCTAAGCAAGCTTTTGATGAGGCAATTGCAGAATTGGA
genomic: GCTCTCAACTTCTCTGTCTTCTACTATGAGATAATGAATTCTCCTGAAAGgtaatgcata ... acttttacagGGCCTGCCATTTGGCTAAGCAAGCTTTTGATGAGGCAATTGCAGAATTGGA
EST: gi|110386347|gb|EC950937.1|EC950937
EST:     GCTCTCAACTTCTCTGTCTTCTACTATGAGATAATGAATTCTCCTGAAAG                         GGCCTGCCATTTGGCTAAGCAAGCTTTTGATGAGGCAATTGCAGAATTGGA
genomic: GCTCTCAACTTCTCTGTCTTCTACTATGAGATAATGAATTCTCCTGAAAGgtaatgcata ... acttttacagGGCCTGCCATTTGGCTAAGCAAGCTTTTGATGAGGCAATTGCAGAATTGGA
EST: gi|351055188|gb|FQ440527.1|FQ440527
EST:     GCTCTCAACTTCTCTGTCTTCTACTATGAGATAATGAATTCTCCTGAAAG                         GGCCTGCCATTTGGCTAAGCAAGCTTTTGATGAGGCAATTGCAGAATTGGA
genomic: GCTCTCAACTTCTCTGTCTTCTACTATGAGATAATGAATTCTCCTGAAAGgtaatgcata ... acttttacagGGCCTGCCATTTGGCTAAGCAAGCTTTTGATGAGGCAATTGCAGAATTGGA