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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGGCTTCCATCTTGTGACGTGGCAACTAAGCGTGATCACTTTTATCAGgtacttagccttttgttgtttaaaaattccttttttagccttttgtcgtttaaaaattccttttactctttgcatgtggatatgaaggaaggcctttaat...

Basic information

species Vitis vinifera
transcript Vv01s0011g00550.t01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351051568|gb|FQ450120.1|FQ450120
EST:     AAAGGCTTCCATCTTGTGACGTGGCAACTAAGCGTGATCACTTTTATCAG                         CTTTGGAAGTCCCACATCAAAAGGCCAATGATATTGGTTGGACCAAGCCTT
genomic: AAAGGCTTCCATCTTGTGACGTGGCAACTAAGCGTGATCACTTTTATCAGgtacttagcc ... ctaacttcagCTTTGGAAGTCCCACATCAAAAGGCCAATGATATTGGTTGGACCAAGCCTT
EST: gi|351014788|gb|FQ437988.1|FQ437988
EST:     AAAGGCTTCCATCTTGTGACGTGGCAACTAAGCGTGATCACTTTTATCAG                         CTTTGGAAGTCCCACATCAAAAGGCCAATGATATTGGTTGGACCAAGCCTT
genomic: AAAGGCTTCCATCTTGTGACGTGGCAACTAAGCGTGATCACTTTTATCAGgtacttagcc ... ctaacttcagCTTTGGAAGTCCCACATCAAAAGGCCAATGATATTGGTTGGACCAAGCCTT
EST: gi|110361486|gb|EC924960.1|EC924960
EST:     AAAGGCTTCCATCTTGTGACGTGGCAACTAAGCGTGATCACTTTTATCAG                         CTTTGGAAGTCCCACATCAAAAGGCCAATGATATTGGTCGGACCAAGCCTT
genomic: AAAGGCTTCCATCTTGTGACGTGGCAACTAAGCGTGATCACTTTTATCAGgtacttagcc ... ctaacttcagCTTTGGAAGTCCCACATCAAAAGGCCAATGATATTGGTTGGACCAAGCCTT
EST: gi|110361507|gb|EC924986.1|EC924986
EST:     AGGCTTCCATCTTGTGACGTGGCAACTAAGCGTGATCACTTTTATCAG                         CTTTGGAAGTCCCACATCAAAAGGCCAATGATATTGGTCGGACCAAGCCTT
genomic: AGGCTTCCATCTTGTGACGTGGCAACTAAGCGTGATCACTTTTATCAGgtacttagcc ... ctaacttcagCTTTGGAAGTCCCACATCAAAAGGCCAATGATATTGGTTGGACCAAGCCTT
EST: gi|349808731|gb|FQ406581.1|FQ406581
EST:     AAAGGCTTCCATCTTGTGACGTGGCAACTAAGCGTGATCACTTTTATCAG                         CTTTGGAAGTCCCACATCAAAAGGCCAATGATATTGGTTGGACCAAGCCTT
genomic: AAAGGCTTCCATCTTGTGACGTGGCAACTAAGCGTGATCACTTTTATCAGgtacttagcc ... ctaacttcagCTTTGGAAGTCCCACATCAAAAGGCCAATGATATTGGTTGGACCAAGCCTT
EST: gi|352786080|gb|FQ481875.1|FQ481875
EST:     AAAGGCTTCCATCTTGTGACGTGGCAACTAAGCGTGATCACTTTTATCAG                         CTTTGGAAGTCCCACATCAAAAGGCCAATGATATTGGTTGGACCAAGCCTT
genomic: AAAGGCTTCCATCTTGTGACGTGGCAACTAAGCGTGATCACTTTTATCAGgtacttagcc ... ctaacttcagCTTTGGAAGTCCCACATCAAAAGGCCAATGATATTGGTTGGACCAAGCCTT
EST: gi|351042817|gb|FQ434379.1|FQ434379
EST:     AAAGGCTTCCATCTTGTGACGTGGCAACTAAGCGTGATCACTTTTATCAT                         CTTTGGAAGTCCCACATCAAAAGGCCAATGATATTGGTTGGACTCA-GCCT
genomic: AAAGGCTTCCATCTTGTGACGTGGCAACTAAGCGTGATCACTTTTATCAGgtacttagcc ... ctaacttcagCTTTGGAAGTCCCACATCAAAAGGCCAATGATATTGGTTGGAC-CAAGCCT
EST: gi|351054615|gb|FQ456812.1|FQ456812
EST:     AAAGGCTTCCATCTTGTGACGTGGCAACTAAGCGTGATCACTTTTATCAG                         CTTTGGAAGTCCCACATCAAAAGGCCAATGATATTGGTTGGACCAAGCCTT
genomic: AAAGGCTTCCATCTTGTGACGTGGCAACTAAGCGTGATCACTTTTATCAGgtacttagcc ... ctaacttcagCTTTGGAAGTCCCACATCAAAAGGCCAATGATATTGGTTGGACCAAGCCTT
EST: gi|349829486|gb|FQ420018.1|FQ420018
EST:     AAAGGCTTCCATCTTGTGACGTGGCAACTAAGCGTGATCACTTTTATCAG                         CTTTGGAAGTCCCACATCAAAAGGCCAATGATATTGGTTGGACCAAGCCTT
genomic: AAAGGCTTCCATCTTGTGACGTGGCAACTAAGCGTGATCACTTTTATCAGgtacttagcc ... ctaacttcagCTTTGGAAGTCCCACATCAAAAGGCCAATGATATTGGTTGGACCAAGCCTT
EST: gi|349830592|gb|FQ416890.1|FQ416890
EST:     AAAGGCTTCCATCTTGTGACGTGGCAACTAAGCGTGATCACTTTTATCAG                         CTTTGGAAGTCCCACATCAAAAGGCCAATGATATTGGTTGGACCAAGCCTT
genomic: AAAGGCTTCCATCTTGTGACGTGGCAACTAAGCGTGATCACTTTTATCAGgtacttagcc ... ctaacttcagCTTTGGAAGTCCCACATCAAAAGGCCAATGATATTGGTTGGACCAAGCCTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAAGGCTTCCATCTTGTGACGTGGCAACTAAGCGTGATCACTTTTATCAGgtacttagccttttgttgtttaaaaattccttttttagccttttgtcgtttaaaaattccttttactctttgcatgtggatatgaaggaaggcctttaat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaggaag