Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAACCAGGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACCgtaagtttgtttcctttcaaatctagcatttgtgtaatggttgttttcctaaatgttaacaggaaccttctatttgtttggcag

Basic information

species Vitis vinifera
transcript Vv01s0010g03380.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0010g03380.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os09g08430.1 (Oryza sativa), 5'ss of exon 5
AAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAACCAGGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACCgtaagtttgtt--tcctttcaaatctagcatttgtgtaatggttgttttcctaaatgttaacaggaaccttctatttgtttggcag
|||||||||||||||||| | || ||  | || ||||| ||||| |||||||| ||||| || |||||||| || ||||| ||||||||| | |||||||||||||||||   | | ||    | |    |||||  | |    ||  | ||   | | |  || ||       ||||        
AAAGGTCTGGATGTTGATACTCTTTATGTGTCCCACATTCAAGTTAACCAGGCCCAGAAGCAGAGGCGCCGTACCTACCGTGCTCATGGACGCATCAACCgtaagtttgtcaatacctttttgtatgctctttgtagagtt-cggtgatgctttgtctcatgagcaaatgatactttgcag-----

upper sequence: Vv01s0010g03380.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G702426_T01 (Zea mays), 5'ss of exon 5
AAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAACCAGGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACCgtaagtttgtttcctttcaaatctagcatttgtgtaatggttgttttcctaaatgttaacaggaaccttctatttgtttggcag
|||||  |||| || ||    |||||  | || |||||||| |||||||| || ||||| || ||||||||||| ||||| ||||| ||| | || ||||||| || |       |     |||  ||||  ||  |         |  | |||| ||     ||  ||     ||||  ||||
AAAGGCTTGGACGTGGACAACCTCTATGTTTCACACATCCAGGTGAACCAAGCCCAGAAGCAGAGGCGCCGCACCTACCGTGCTCACGGACGCATTAACCgtatgtatcgaaggat---ggtctttcattcttgcgaca------ctgttgaatggtatatttaatgttgc---tgttctgcag

upper sequence: Vv01s0010g03380.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G119169_T04 (Zea mays), 5'ss of exon 4
AAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAACCAGGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACCgtaagtttgtttcctttcaaatctagcatttgtgtaatggttgttttcctaaatgttaacaggaaccttctatttgtttggcag
|||||||| ||||| ||| | |||||  | || ||||| |||||||||||||| ||||| ||  ||||| | || ||||| ||||||||  | |||||||||||||  || |    |  ||  | ||   | ||  |||      || |||  ||         | | |   |   |   ||||
AAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAACCAGGCTCAGAAGCAGCGGCGCAGGACCTACCGCGCTCATGGGCGCATCAACCgtaagtcagtctgaagttgaagttcgc---tatgctatgaacaggttactatttgcagcttaagatcctacctacctggtgcag

upper sequence: Vv01s0010g03380.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G119169_T01 (Zea mays), 5'ss of exon 6
AAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAACCAGGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACCgtaagtttgtttcctttcaaatctagcatttgtgtaatggttgttttcctaaatgttaacaggaaccttctatttgtttggcag
|||||||| ||||| ||| | |||||  | || ||||| |||||||||||||| ||||| ||  ||||| | || ||||| ||||||||  | |||||||||||||  || |    |  ||  | ||   | ||  |||                                             
AAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAACCAGGCTCAGAAGCAGCGGCGCAGGACCTACCGCGCTCATGGGCGCATCAACCgtaagtcagtctgaagttgaagttcgc---tatgctatgaacag----------------------------------------

upper sequence: Vv01s0010g03380.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA08G10910.2 (Glycine max), 5'ss of exon 5
AAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAACCAGGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACCgtaagtttgtttcctttcaaatctagcatttgtgtaatggttgttttcctaaatgttaacaggaaccttctatttgtttggcag
|||||| ||||||||||| |||| ||||| || || |||||||| || || |||||||| ||||| ||||| |||||||| || |||||||||||||| |||| ||||       |   ||| | |  ||   |   || |   |||   |    || |        | || ||| |   |   
AAAGGTTTGGATGTTGATGCACTGTACATTTCGCATATCCAAGTCAATCAAGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCgtatgttttaaatgatgagaattttgttttaacgggttgttatcttttacacggttttatttatggatactgtttttgcag---

upper sequence: Vv01s0010g03380.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA05G27940.1 (Glycine max), 5'ss of exon 5
AAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAACCAGGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACCgtaagtt---tgtttcctttcaaatctagcatttgtgtaatggttgttttcctaaatgttaacaggaaccttctatttgtttggcag
|||||| ||||||||||| | || ||||| ||||| |||||||| || || |||||||| ||||| ||||| |||||||| || |||||||||||||| |||| ||    ||||   |||    | |      | | ||    ||       |   | || |  |  ||  | | |           
AAAGGTTTGGATGTTGATGCGCTTTACATTTCTCATATCCAAGTCAATCAAGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCgtatgtcaaatgttgagttttttgttttaaggctttttatcatttacacggttt--tatttatggagactgtttttgcag-------

upper sequence: Vv01s0010g03380.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA18G01110.1 (Glycine max), 5'ss of exon 5
AAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAACCAGGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACCgtaagtttgtttcctttcaaatctagcatttgtgtaatggttgttttcctaaatgttaacaggaaccttctatttgtttggcag
|||||| ||||||| ||| | || ||||| ||||| ||||| || || || |||||||| ||||| |||||||| ||| | |||||||||||||||||||||| ||     |  |||     ||| || |    |||||| | |  |  ||  |  | |     |   | | ||| ||| ||||
AAAGGTTTGGATGTCGATGCTCTGTACATTTCTCATATCCAGGTTAATCAAGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACCgtatgtcg--ctggttttgttgctatcactgacttaatggat-tactattacttacttatgttgagagtgtcttttttttgcag

upper sequence: Vv01s0010g03380.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA16G28550.1 (Glycine max), 5'ss of exon 1
AAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAACCAGGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACC-
                            | || || |||||||| || || |||||||| ||||| ||||| |||||||| || |||||||||||||| |    || ||    | | |  || ||     ||  ||| | || ||  |              |  ||| ||  | |    ||| ||     | |  |||||| |     |    
----------------------------TTTCGCATATCCAAGTCAATCAAGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCCTTATATGTCATCTCCGTGCCACATAGAgttaatattatctgaaaaagaagaagattttatttcatttgccacactaaatacaagagtatgatcccctatttatactaaaatag

upper sequence: Vv01s0010g03380.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA11G37160.1 (Glycine max), 5'ss of exon 5
AAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAACCAGGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACCgtaagtttgtttcctttcaaatctagcatttgtgtaatgg-ttgttttcctaaatgttaacaggaaccttctatttgtttggcag
|||||| ||||||| ||| | || ||||| || ||  |||| || || || |||||||| |||||||| || || ||| | |||||||||||||||||||||| ||   |    ||    || | |  |     ||||||  |  | |   |    ||    |  |   ||  ||| ||| ||||
AAAGGTTTGGATGTCGATGCTCTGTACATTTCCCATGTCCAGGTTAATCAAGCACAGAAGCAAAGGCGTCGTACCTACAGAGCTCATGGAAGAATCAACCgtatgtcactgattttgttgatattg--tcgacttaatggactactattacatgcttttgttgagagagtcctttttttttgcag

upper sequence: Vv01s0010g03380.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT1G67430.1 (Arabidopsis thaliana), 5'ss of exon 5
AAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAACCAGGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACCgtaagtttgtttcctttcaaatctagcatttgtgtaa-tggttgttttcctaaatgttaacaggaaccttctatttgtttggcag
|||||| ||||||||||| | |||| |||||| ||||||||||||||||||||    || |||||| |  | || ||||| ||||| ||||||||||||||||||||||     ||  |||||    |  |   ||  |  ||||  |||    | | |    |    |  |  ||| ||| |||
AAAGGTTTGGATGTTGATGCCCTCTTCATATCACACATCCAAGTGAACCAGGCCGCAAAGCAAAGGAGAAGGACTTACCGTGCTCACGGAAGAATCAACCgtaagtttgagattttgtaaatcacttacattgatagctttttgtaatccattgtatgactcagtttgtctttcttggttg-cag

upper sequence: Vv01s0010g03380.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT1G27400.1 (Arabidopsis thaliana), 5'ss of exon 5
AAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAACCAGGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACCgtaagtttgtttcctttcaaatctagcatttgtgtaatggttgttttcctaaatgt-taacaggaaccttctatttgtttggcag--------
|||||| ||||||| ||| | || | ||| |||||||||||||||||||| |||   ||||| ||| |  | ||||| || ||||||||||||||||| |||| || |   || |||| | || |   ||| |  || | ||||||    |      |       ||  || ||||  ||             
AAAGGTTTGGATGTCGATGCCCTTTTCATTTCTCACATCCAAGTGAACCAAGCAGCAAAACAGAGGAGAAGGACATATCGTGCTCATGGAAGAATCAATCgtatgtct---tcttttctattcgactgtttttacaacgtttgtttcttcattcacattgtgctgactctcgatttaattctatcttatgcag

upper sequence: Vv01s0010g03380.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: PP1S364_56V6.2 (Physcomitrella patens), 5'ss of exon 3
AAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAACCAGGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACCgtaagtt-tgtttcctttcaaatctagcatttgtgtaatggttgttttcctaaatgttaacaggaacc---------------ttctatttgtttggcag
|||||||| ||||| ||  | ||     |||| ||||| ||||| |||||||||||||||||  |  | || || ||||| ||||||||| | |||||||||||||| |     | ||  | |     |  | | | ||  |   |    | | || | |  ||||                 |  ||  | |||     
AAAGGTCTTGATGTAGACACTCTTGTTGTATCCCACATTCAAGTTAACCAGGCACAGAAACAGCGTAGACGAACCTACCGTGCTCATGGACGTATCAACCgtaagttatcccatcgttttacttggttagctttatgatcttctgtcctattagtgctgagcggaagggcgatgatgacgaaatcttacctatttcatga

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351013781|gb|FQ433933.1|FQ433933
EST:     GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACC                         CATATATGTCATCACCATGCCATATCGAGTTGATTTTGTCTGAAAAGGAAG
genomic: GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACCgtaagtttgt ... tgtttggcagCATATATGTCATCACCATGCCATATTGAGTTGATTTTGTCTGAAAAGGAAG
EST: gi|110397843|gb|EC963779.1|EC963779
EST:     GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACC                         CATATATGTCATCACCATGCCATATCGAGTTGATTTTGTCTGAAAAGGAAG
genomic: GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACCgtaagtttgt ... tgtttggcagCATATATGTCATCACCATGCCATATTGAGTTGATTTTGTCTGAAAAGGAAG
EST: gi|110385986|gb|EC950553.1|EC950553
EST:     GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACC                         CATATATGTCATCACCATGCCATATCGAGTTGATTTTGTCTGAAAAGGAAG
genomic: GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACCgtaagtttgt ... tgtttggcagCATATATGTCATCACCATGCCATATTGAGTTGATTTTGTCTGAAAAGGAAG
EST: gi|110376461|gb|EC941526.1|EC941526
EST:     GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACC                         CATATATGTCATCACCATGCCATATCGAGTTGATTTTGTCTGAAAAGGAAG
genomic: GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACCgtaagtttgt ... tgtttggcagCATATATGTCATCACCATGCCATATTGAGTTGATTTTGTCTGAAAAGGAAG
EST: gi|71873657|gb|DT022712.1|DT022712
EST:     GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACC                         CATATATGTCATCACCATGCCATATCGAGTTGATTTTGTCTGAAAAGGAAG
genomic: GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACCgtaagtttgt ... tgtttggcagCATATATGTCATCACCATGCCATATTGAGTTGATTTTGTCTGAAAAGGAAG
EST: gi|110378218|gb|EC943338.1|EC943338
EST:     GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACC                         CATATATGTCATCACCATGCCATATCGAGTTGATTTTGTCTGAAAAGGAAG
genomic: GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACCgtaagtttgt ... tgtttggcagCATATATGTCATCACCATGCCATATTGAGTTGATTTTGTCTGAAAAGGAAG
EST: gi|110688549|gb|EE067229.1|EE067229
EST:     GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACC                         CATATATGTCATCACCATGCCATATCGAGTTGATTTTGTCTGAAAAGGAAG
genomic: GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACCgtaagtttgt ... tgtttggcagCATATATGTCATCACCATGCCATATTGAGTTGATTTTGTCTGAAAAGGAAG
EST: gi|110692078|gb|EE070908.1|EE070908
EST:     GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACC                         CATATATGTCATCACCATGCCATATCGAGTTGATTTTGTCTGAAAAGGAAG
genomic: GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACCgtaagtttgt ... tgtttggcagCATATATGTCATCACCATGCCATATTGAGTTGATTTTGTCTGAAAAGGAAG
EST: gi|110423054|gb|EC989389.1|EC989389
EST:     GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACC                         CATATATGTCATCACCATGCCATATTGAGTTGATTTTGTCTGAAAAGGAAG
genomic: GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACCgtaagtttgt ... tgtttggcagCATATATGTCATCACCATGCCATATTGAGTTGATTTTGTCTGAAAAGGAAG
EST: gi|110689601|gb|EE065966.1|EE065966
EST:     GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACC                         CATATATGTCATCACCATGCCATATCGAGTTGATTTTGTCTGAAAAGGAAG
genomic: GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACCgtaagtttgt ... tgtttggcagCATATATGTCATCACCATGCCATATTGAGTTGATTTTGTCTGAAAAGGAAG
EST: gi|71869773|gb|DT018828.1|DT018828
EST:     GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACC                         CATATATGTCATCACCATGCCATATCGAGTTGATTTTGTCTGAGAAGGAAG
genomic: GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACCgtaagtttgt ... tgtttggcagCATATATGTCATCACCATGCCATATTGAGTTGATTTTGTCTGAAAAGGAAG
EST: gi|110689920|gb|EE066564.1|EE066564
EST:     GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACC                         CATATATGTCATCACCATGCCATATCGAGTTGATTTTGTCTGAAAAGGAAG
genomic: GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACCgtaagtttgt ... tgtttggcagCATATATGTCATCACCATGCCATATTGAGTTGATTTTGTCTGAAAAGGAAG
EST: gi|110715617|gb|EE093874.1|EE093874
EST:     GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACC                         CATATATGTCATCACCATGCCATATCGAGTTGATTTTGTCTGAAAAGGAAG
genomic: GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACCgtaagtttgt ... tgtttggcagCATATATGTCATCACCATGCCATATTGAGTTGATTTTGTCTGAAAAGGAAG
EST: gi|110419782|gb|EC986031.1|EC986031
EST:     GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACC                         CATATATGTCATCACCATGCCATATTGAGTTGATTTTGTCTGAAAAGGAAG
genomic: GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACCgtaagtttgt ... tgtttggcagCATATATGTCATCACCATGCCATATTGAGTTGATTTTGTCTGAAAAGGAAG
EST: gi|34416764|gb|CF415518.1|CF415518
EST:     GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACC                         CATATATGTCATCACCATGCCATATCGAGTTGATTTTGTCTGAAAAGGAAG
genomic: GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACCgtaagtttgt ... tgtttggcagCATATATGTCATCACCATGCCATATTGAGTTGATTTTGTCTGAAAAGGAAG
EST: gi|110717067|gb|EE092597.1|EE092597
EST:     GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACC                         CATATATGTCATCACCATGCCATATTGAGTTGATTTTGTCTGAAAAGGAAG
genomic: GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACCgtaagtttgt ... tgtttggcagCATATATGTCATCACCATGCCATATTGAGTTGATTTTGTCTGAAAAGGAAG
EST: gi|351024796|gb|FQ430621.1|FQ430621
EST:     GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACC                         CATATATGTCATCACCATGCCATATCGAGTTGATTTTGTCTGAAAAGGAAG
genomic: GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACCgtaagtttgt ... tgtttggcagCATATATGTCATCACCATGCCATATTGAGTTGATTTTGTCTGAAAAGGAAG
EST: gi|110374693|gb|EC939616.1|EC939616
EST:     GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACC                         CATATATGTCATCACCATGCCATATCGAGTTGATTTTGTCTGAAAAGGAAG
genomic: GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACCgtaagtttgt ... tgtttggcagCATATATGTCATCACCATGCCATATTGAGTTGATTTTGTCTGAAAAGGAAG
EST: gi|110387423|gb|EC952086.1|EC952086
EST:     GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACC                         CATATATGTCATCACCATGCCATATCGAGTTGATTTTGTCTGAAAAGGAAG
genomic: GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACCgtaagtttgt ... tgtttggcagCATATATGTCATCACCATGCCATATTGAGTTGATTTTGTCTGAAAAGGAAG
EST: gi|110391452|gb|EC956429.1|EC956429
EST:     GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACC                         CATATATGTCATCACCATGCCATATCGAGTTGATTTTGTCTGAAAAGGAAG
genomic: GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACCgtaagtttgt ... tgtttggcagCATATATGTCATCACCATGCCATATTGAGTTGATTTTGTCTGAAAAGGAAG
EST: gi|352787033|gb|FQ476066.1|FQ476066
EST:     GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACC                         CATATATGTCATCACCATGCCATATCGAGTTGATTTTGTCTGAAAAGGAAG
genomic: GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACCgtaagtttgt ... tgtttggcagCATATATGTCATCACCATGCCATATTGAGTTGATTTTGTCTGAAAAGGAAG
EST: gi|56409601|gb|CX017853.1|CX017853
EST:     GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACC                         CATATATGTCATCACCATGCCATATTGAGTTGATTTTGTCTGAAAAGGAAG
genomic: GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACCgtaagtttgt ... tgtttggcagCATATATGTCATCACCATGCCATATTGAGTTGATTTTGTCTGAAAAGGAAG
EST: gi|110372343|gb|EC936500.1|EC936500
EST:     GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACC                         CATATATGTCATCACCATGCCATATCGAGTTGATTTTGTCTGAAAAGGAAG
genomic: GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACCgtaagtttgt ... tgtttggcagCATATATGTCATCACCATGCCATATTGAGTTGATTTTGTCTGAAAAGGAAG
EST: gi|110694415|gb|EE071499.1|EE071499
EST:     GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACC                         CATATATGTCATCACCATGCCATATCGAGTTGATTTTGTCTGAAAAGGAAG
genomic: GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACCgtaagtttgt ... tgtttggcagCATATATGTCATCACCATGCCATATTGAGTTGATTTTGTCTGAAAAGGAAG
EST: gi|71873227|gb|DT022282.1|DT022282
EST:     GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACC                         CATATATGTCATCACCATGCCATATCGAGTTGATTTTGTCTGAAAAGGAAG
genomic: GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACCgtaagtttgt ... tgtttggcagCATATATGTCATCACCATGCCATATTGAGTTGATTTTGTCTGAAAAGGAAG
EST: gi|110705483|gb|EE082385.1|EE082385
EST:     GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACC                         CATATATGTCATCACCATGCCATATTGAGTTGATTTTGTCTGAAAAGGAAG
genomic: GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACCgtaagtttgt ... tgtttggcagCATATATGTCATCACCATGCCATATTGAGTTGATTTTGTCTGAAAAGGAAG
EST: gi|77588447|gb|DV223435.1|DV223435
EST:     GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACC                         CATATATGTCATCACCATGCCATATCGAGTTGATTTTGTCTGAAAAGGAAG
genomic: GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACCgtaagtttgt ... tgtttggcagCATATATGTCATCACCATGCCATATTGAGTTGATTTTGTCTGAAAAGGAAG
EST: gi|77579783|gb|DV218769.1|DV218769
EST:     GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACC                         CATATATGTCATCACCATGCCATATCGAGTTGATTTTGTCTGAAAAGGAAG
genomic: GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACCgtaagtttgt ... tgtttggcagCATATATGTCATCACCATGCCATATTGAGTTGATTTTGTCTGAAAAGGAAG
EST: gi|110375254|gb|EC940222.1|EC940222
EST:     GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACC                         CATATATGTCATCACCATGCCATATCGAGTTGATTTTGTCTGAAAAGGAAG
genomic: GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACCgtaagtttgt ... tgtttggcagCATATATGTCATCACCATGCCATATTGAGTTGATTTTGTCTGAAAAGGAAG
EST: gi|110691990|gb|EE070724.1|EE070724
EST:     GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACC                         CATATATGTCATCACCATGCCATATCGAGTTGATTTTGTCTGAAAAGGAAG
genomic: GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACCgtaagtttgt ... tgtttggcagCATATATGTCATCACCATGCCATATTGAGTTGATTTTGTCTGAAAAGGAAG
EST: gi|110389306|gb|EC954132.1|EC954132
EST:     GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACC                         CATATATGTCATCACCATGCCATATCGAGTTGATTTTGTCTGAAAAGGAAG
genomic: GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACCgtaagtttgt ... tgtttggcagCATATATGTCATCACCATGCCATATTGAGTTGATTTTGTCTGAAAAGGAAG
EST: gi|110715297|gb|EE093186.1|EE093186
EST:     GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACC                         CATATATGTCATCACCATGCCATATTGAGTTGATTTTGTCTGAAAAGGAAG
genomic: GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACCgtaagtttgt ... tgtttggcagCATATATGTCATCACCATGCCATATTGAGTTGATTTTGTCTGAAAAGGAAG
EST: gi|351013783|gb|FQ433935.1|FQ433935
EST:     GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACC                         CATATATGTCATCACCATGCCATATCGAGTTGATTTTGTCTGAAAAGGAAG
genomic: GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACCgtaagtttgt ... tgtttggcagCATATATGTCATCACCATGCCATATTGAGTTGATTTTGTCTGAAAAGGAAG
EST: gi|110716791|gb|EE092082.1|EE092082
EST:     GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACC                         CATATATGTCATCACCATGCCATATTGAGTTGATTTTGTCTGAAAAGGAAG
genomic: GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACCgtaagtttgt ... tgtttggcagCATATATGTCATCACCATGCCATATTGAGTTGATTTTGTCTGAAAAGGAAG
EST: gi|110696430|gb|EE072550.1|EE072550
EST:     GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACC                         CATATATGTCATCACCATGCCATATCGAGTTGATTTTGTCTGAAAAGGAAG
genomic: GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACCgtaagtttgt ... tgtttggcagCATATATGTCATCACCATGCCATATTGAGTTGATTTTGTCTGAAAAGGAAG
EST: gi|30130595|gb|CB915934.1|CB915934
EST:     GGCACAGAAACAAAGGCGCCGCACATACCGTGCTCATGGAAGAATCAACC                         CATATATGTCATCACCATGCCATATCGAGTTGATTTTGTCTGAAAAGGAAG
genomic: GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACCgtaagtttgt ... tgtttggcagCATATATGTCATCACCATGCCATATTGAGTTGATTTTGTCTGAAAAGGAAG
EST: gi|110701152|gb|EE078432.1|EE078432
EST:     GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACC                         CATATATGTCATCACCATGCCATATTGAGTTGATTTTGTCTGAAAAGGAAG
genomic: GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACCgtaagtttgt ... tgtttggcagCATATATGTCATCACCATGCCATATTGAGTTGATTTTGTCTGAAAAGGAAG
EST: gi|110725494|gb|EE102063.1|EE102063
EST:     GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACC                         CATATATGTCATCACCATGCCATATTGAGTTGATTTTGTCTGAAAAGGAAG
genomic: GGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACCgtaagtttgt ... tgtttggcagCATATATGTCATCACCATGCCATATTGAGTTGATTTTGTCTGAAAAGGAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAACCAGGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACCgtaagtttgtttcctttcaaatctagcatttgtgtaatggttgttttcctaaatgttaacaggaaccttctatttgtttggcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA