Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCACAATGGCTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAGgtaatgtatttttgttgttttctctaatttgcactctttttcaggcctgtgatctacaataattatggaatgatttgatagtactggttctgctactgta...

Basic information

species Vitis vinifera
transcript Vv01s0010g02900.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0010g02900.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os06g06030.1 (Oryza sativa), 5'ss of exon 3
ATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCACAATGGCTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAGgtaatgtatttttgttgttttctctaatttgcactctttttcaggcctgtgatctacaataattatggaatgatttgatagtactggttctgctactgta
| |||||| ||||||||||||||| ||||| ||||||||||| |||||||| ||||| ||||||||||| || |||||||| || || |||||||| |||||  |  ||||    |   || |   | |||||     |||||    ||      || | || || |  ||| |||   ||                   
AACTGTGAGGAAAATTATTGAAATAAATCCGTACATGCTTGGAACAATGGCAGGAGGTGCTGCTGATTGTCAATTTTGGCATAGGAACTTGGGCATCAAGgt--tagatttcaacttgattgt---acttgca-----tttcatcattgcagagaactaaaagtaggttatgctttt-cag-------------------

upper sequence: Vv01s0010g02900.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G102596_T02 (Zea mays), 5'ss of exon 3
ATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCACAATGGCTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAGgtaatgtatttttgttgttttctctaatttgcactc-tttttcaggcctgtgatctacaataattatggaatgatttgatagtactggttctgctactgta
| | |||| ||||||||||||||| ||||| |||||||| || |||||||||||||| |||||||||||||| |||||||| || ||  | || |  ||||| | | | |    ||  ||||  |||||  | ||  | || |     ||     |      |  || |  |  ||| |                      
AACCGTGAGGAAAATTATTGAAATAAATCCTTACATGCTGGGGACAATGGCTGGAGGTGCTGCTGATTGCCAATTTTGGCATAGGAACCTAGGAACCAAGgtca-gaagtcggcttcctttcaataattatctcttatgttgcccctttgcagggtggggctaacataggttcttttcag---------------------

upper sequence: Vv01s0010g02900.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA06G17960.1 (Glycine max), 5'ss of exon 4
ATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCACAATGGCTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAGgtaatgtatttt-tgttgttttctctaatttgcactctttttcaggcctgtgatctacaataattatggaatgatttgatagtactggttctgctactgta--
 ||||||||||| ||||||||||||||||| || |||||||| |||||||||||||| ||||||||||| |||||||||||||| ||| | || || |||||||| |||      |||     | ||  |||||   ||  |   | ||||  |||   ||  ||| |  |   |     |  | |  | |  ||| | |   
GTCTGTGAAGAAGATTATTGAAATTAATCCGTATATGCTTGGGACAATGGCTGGAGGTGCTGCTGATTGTCAGTTTTGGCACAGGAATCTTGGGATCAAGgtaatctatgcaaccttgaaccttgtatattgcatggttgcttttgtctgt--tctgttatctttaggtcagtctcctgcaaaatttctgcc-ctagtttccc

upper sequence: Vv01s0010g02900.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA04G37030.3 (Glycine max), 5'ss of exon 4
ATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCACAATGGCTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAGgtaatgtatttt-tgttgttttctctaatttgcactctttttcaggcctgtgatctacaataattatggaatgatttgatagtactggttctgctactgta-
 ||||||||||||||||| ||||| ||||| || |||||||| ||||||||||| || |||||||||||||||||||||||||| ||| | || ||||||||||| | |      |||   |  | |  |||||   ||  |   ||||||  |||   ||  ||| |  |   |      | | || | |           
GTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGACAATGGCTGGTGGTGCTGCTGATTGCCAGTTTTGGCACAGGAATCTCGGGATTAAGgtaatctttgcaaccttgagcttacaatcttgcatggttgcttttgcctgt--tctgttatctttaggtcagtctcctgccgaattgctgcaatagtctccc

upper sequence: Vv01s0010g02900.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT3G26340.1 (Arabidopsis thaliana), 5'ss of exon 4
ATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCACAATGGCTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAGgtaatgta-tttttgttgttttctctaatttgcactctttttcaggcctgtgatctacaataatta-tggaatgatttgatagtactggttctgctactgta
|||||||||||| ||||||||||||||||| || |||||||| ||||||||||| || ||||||||||| || || |||||||||||| |||| |||||||||   ||   || ||| || |      | || | |  |  |  || || | |  ||   |  ||  ||     ||  | |  ||||  ||    | |  | 
ATCTGTGAAGAAGATTATTGAAATTAATCCTTATATGCTTGGTACAATGGCTGGTGGTGCTGCTGATTGTCAATTCTGGCACAGAAATCTGGGAATTAAGgtaccctaacgttagtttttgttagctttctgaattgatgattgggtctatcagttatcttccttgctgtggcaatccggt--tacttcttaccttcccttt

upper sequence: Vv01s0010g02900.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT1G13060.1 (Arabidopsis thaliana), 5'ss of exon 4
ATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCACAATGGCTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAGgtaatgtatttttgttgttttc--tctaatttgcactcttt-ttcaggcctgtgatctacaataattatggaatgatttgatagtactg--gttctgctactgta
|||||||||||| ||||||||||| ||||| || ||||| || ||||||||||||||||||||||||||||| || |||||||||||| | || |||||||||    | |     | ||||    |   | || |||  |   |  |  || ||||  |   |  |    |      | |  | |  ||  |   || ||     
ATCTGTGAAGAAGATTATTGAAATCAATCCTTATATGCTCGGTACAATGGCTGGAGGAGCTGCTGATTGCCAATTCTGGCACAGAAATCTTGGAATTAAGgtacctaactagaaatctttttggccgtgtctgaactgataacttggatctttgattaatctttctctctgtggttatcgggaatcttgctgccttgtta-----

upper sequence: Vv01s0010g02900.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: PP1S2_300V6.1 (Physcomitrella patens), 5'ss of exon 3
ATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCACAATGGCTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAGgta-----atgtatttttgttgttttctctaatttgcactctttttcaggcctgtgatctacaataattatggaatgatttgatagt--actggttctgctactgta
||| |||||||||||| | ||||| || || ||| || | ||||||||||||||||| ||||| ||||| |||||||||||  ||||| | ||||     |||     | ||| |||||||| ||    |  | || |      |  ||  | ||   ||   |  ||  ||||      ||  |||  |||  |      || |||
ATCGGTGAAGAAAATTTTGGAAATCAACCCTTACTTGTTGGGCACAATGGCTGGAGGTGCTGCAGATTGTCAGTTTTGGCAACGAAATCTAGGCACACGAgtatctcaacgtacttttgttgcttctagttctctgaa------tgtagaacagtaggctgtgagtat-gtggatgttcatgcaagtcaactactgggatcacagta

upper sequence: Vv01s0010g02900.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: PP1S39_347V6.1 (Physcomitrella patens), 5'ss of exon 3
ATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCACAATGGCTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAGgtaatgtatttttgttgtttt-ctctaatttgcactctttttcaggcctgtgatctacaataattatggaa--tgatttgatagtactggttctgctactgta---
||| |||||||||||| | || || || |||||| || | ||||| ||||| ||||| || |||||||| |||||||||||  | ||| | |||| |  |||| |  |   |  ||   || || |  ||     || ||||  || | ||   |    |  ||| ||||   ||||||  | || | || |   |   |||    
ATCGGTGAAGAAAATTCTGGAGATCAACCCCTACTTGTTGGGCACTATGGCGGGAGGTGCCGCTGATTGTCAGTTTTGGCAACGGAATCTTGGCACTCGGgtacttcaacctactttcattgctttggttc---ttcatttttgggacggtacgcagtga--attgtggatcttgatttt-ttgtgcaggattctcgcatgtgcta

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351020097|gb|FQ445704.1|FQ445704
EST:     CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAG                         TGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
genomic: CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAGgtaatgtatt ... aatattccagTGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
EST: gi|110697158|gb|EE073899.1|EE073899
EST:     CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAG                         TGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
genomic: CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAGgtaatgtatt ... aatattccagTGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
EST: gi|110377163|gb|EC942221.1|EC942221
EST:     CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAG                         TGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
genomic: CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAGgtaatgtatt ... aatattccagTGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
EST: gi|110416438|gb|EC982420.1|EC982420
EST:     CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAG                         TGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
genomic: CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAGgtaatgtatt ... aatattccagTGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
EST: gi|71856922|gb|DT005977.1|DT005977
EST:     CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAG                         TGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
genomic: CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAGgtaatgtatt ... aatattccagTGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
EST: gi|71862964|gb|DT012019.1|DT012019
EST:     CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAG                         TGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
genomic: CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAGgtaatgtatt ... aatattccagTGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
EST: gi|110687524|gb|EE065028.1|EE065028
EST:     CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAG                         TGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
genomic: CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAGgtaatgtatt ... aatattccagTGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
EST: gi|110400292|gb|EC966850.1|EC966850
EST:     CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAG                         TGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
genomic: CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAGgtaatgtatt ... aatattccagTGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
EST: gi|156735848|gb|EV239969.1|EV239969
EST:     CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAG                         TGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
genomic: CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAGgtaatgtatt ... aatattccagTGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
EST: gi|294966461|gb|GW839568.1|GW839568
EST:     CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAG                         TGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
genomic: CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAGgtaatgtatt ... aatattccagTGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
EST: gi|110698339|gb|EE075751.1|EE075751
EST:     CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAG                         TGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
genomic: CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAGgtaatgtatt ... aatattccagTGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
EST: gi|110361238|gb|EC924696.1|EC924696
EST:     CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAG                         TGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
genomic: CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAGgtaatgtatt ... aatattccagTGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
EST: gi|71864543|gb|DT013598.1|DT013598
EST:     CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAG                         TGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
genomic: CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAGgtaatgtatt ... aatattccagTGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
EST: gi|71871573|gb|DT020628.1|DT020628
EST:     CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAG                         TGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
genomic: CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAGgtaatgtatt ... aatattccagTGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
EST: gi|110723155|gb|EE100145.1|EE100145
EST:     CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAG                         TGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
genomic: CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAGgtaatgtatt ... aatattccagTGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
EST: gi|71857078|gb|DT006133.1|DT006133
EST:     CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAG                         TGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
genomic: CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAGgtaatgtatt ... aatattccagTGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
EST: gi|110727856|gb|EE105095.1|EE105095
EST:     CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAG                         TGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
genomic: CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAGgtaatgtatt ... aatattccagTGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
EST: gi|110733141|gb|EE109075.1|EE109075
EST:     CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAG                         TGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
genomic: CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAGgtaatgtatt ... aatattccagTGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
EST: gi|71856981|gb|DT006036.1|DT006036
EST:     CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAG                         TGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
genomic: CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAGgtaatgtatt ... aatattccagTGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
EST: gi|110690175|gb|EE067043.1|EE067043
EST:     CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAG                         TGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
genomic: CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAGgtaatgtatt ... aatattccagTGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
EST: gi|110358305|gb|EC922422.1|EC922422
EST:     ATTGCCATTTTTGGCACAGAAATTTGGGCATTAAG                         TGCCGACTGCATGAACTTGCAAACAAGGGAAGGATTTCAGTTACAGGGGCT
genomic: ATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAGgtaatgtatt ... aatattccagTGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
EST: gi|37184921|gb|CF604274.1|CF604274
EST:     CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAACTTGGGCATTAAG                         TGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
genomic: CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAGgtaatgtatt ... aatattccagTGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
EST: gi|37188874|gb|CF608223.1|CF608223
EST:     CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAG                         TGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
genomic: CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAGgtaatgtatt ... aatattccagTGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
EST: gi|110365001|gb|EC928674.1|EC928674
EST:     CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAG                         TGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
genomic: CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAGgtaatgtatt ... aatattccagTGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
EST: gi|71862057|gb|DT011112.1|DT011112
EST:     CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAG                         TGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
genomic: CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAGgtaatgtatt ... aatattccagTGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
EST: gi|110367168|gb|EC931094.1|EC931094
EST:     CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAG                         TGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
genomic: CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAGgtaatgtatt ... aatattccagTGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
EST: gi|110718057|gb|EE094454.1|EE094454
EST:     AAATTTGGGCATTAAG                         TGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
genomic: AAATTTGGGCATTAAGgtaatgtatt ... aatattccagTGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
EST: gi|110401821|gb|EC968442.1|EC968442
EST:     CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAG                         TGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
genomic: CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAGgtaatgtatt ... aatattccagTGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
EST: gi|351033347|gb|FQ446579.1|FQ446579
EST:     CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAG                         TGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
genomic: CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAGgtaatgtatt ... aatattccagTGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
EST: gi|110397717|gb|EC963560.1|EC963560
EST:     CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAG                         TGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
genomic: CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAGgtaatgtatt ... aatattccagTGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
EST: gi|30131617|gb|CB916956.1|CB916956
EST:     CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAG                         TGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
genomic: CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAGgtaatgtatt ... aatattccagTGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
EST: gi|110364655|gb|EC928066.1|EC928066
EST:     CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAG                         TGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
genomic: CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAGgtaatgtatt ... aatattccagTGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
EST: gi|110372494|gb|EC936666.1|EC936666
EST:     CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAG                         TGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
genomic: CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAGgtaatgtatt ... aatattccagTGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
EST: gi|161720849|gb|FC069601.1|FC069601
EST:     CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAG                         TGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
genomic: CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAGgtaatgtatt ... aatattccagTGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
EST: gi|110691315|gb|EE069273.1|EE069273
EST:     CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAG                         TGCCGACTGCATGAACTTGCAAACAAGAGAAGGATTTCAGTTACAGGGGCT
genomic: CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAGgtaatgtatt ... aatattccagTGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
EST: gi|110397937|gb|EC963940.1|EC963940
EST:     CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAG                         TGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
genomic: CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAGgtaatgtatt ... aatattccagTGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
EST: gi|110732056|gb|EE107008.1|EE107008
EST:     CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAG                         TGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
genomic: CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAGgtaatgtatt ... aatattccagTGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
EST: gi|110726596|gb|EE102526.1|EE102526
EST:     CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAG                         TGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
genomic: CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAGgtaatgtatt ... aatattccagTGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
EST: gi|37183791|gb|CF603145.1|CF603145
EST:     CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAG                         TGCCGACTGCATGAAC
genomic: CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAGgtaatgtatt ... aatattccagTGCCGACTGCATGAAC
EST: gi|110368695|gb|EC932705.1|EC932705
EST:     CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAG                         TGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT
genomic: CTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAGgtaatgtatt ... aatattccagTGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCACAATGGCTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAGgtaatgtatttttgttgttttctctaatttgcactctttttcaggcctgtgatctacaataattatggaatgatttgatagtactggttctgctactgta

- - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT