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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGTAAGAAATTTCCTGCCACATCTTTCACTGGATCTCCGGTTCTCTCTGACTCTGGATTTGACTTGTTGAACAAACTTTTAACTTATGACCCTGAGAAGgtgattttttagttcaacatctataaatgttttgaggaaatgttttgttttctaggttggtatttagataatgttgtttattatggcctttatgttctattacag

Basic information

species Vitis vinifera
transcript Vv01s0010g02550.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0010g02550.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA08G10810.1 (Glycine max), 5'ss of exon 4
GCGTAAGAAATTTCCTGCCACATCTTTCACTGGATCTCCGGTTCTCTCTGACTCTGGATTTGACTTGTTGAACAAACTTTTAACTTATGACCCTGAGAAGgtgattttttagttcaacatctataaatgttttgaggaaatgttttgttttctaggttggtatttagataatgttgtttattatggcctttatgttctattacag
|||||| || |||||||||||||| |||||||||||||| ||||| ||||| ||||||||||| ||||||||||| ||| |||||||||||||||||||||| |   ||   |     |  |  || |  ||||   | |  | ||  | |  |  ||  | |  |     |  | |||  |   |                   
GCGTAAAAAGTTTCCTGCCACATCATTCACTGGATCTCCTGTTCTTTCTGATTCTGGATTTGATTTGTTGAACAAGCTTCTAACTTATGACCCTGAGAAGgtaaaggttacatgagctacatg-aattaatttggtaacaaatatttgtctgaatattaatgt--aagacctactattttatgcag-------------------

upper sequence: Vv01s0010g02550.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA05G27820.1 (Glycine max), 5'ss of exon 7
GCGTAAGAAATTTCCTGCCACATCTTTCACTGGATCTCCGGTTCTCTCTGACTCTGGATTTGACTTGTTGAACAAACTTTTAACTTATGACCCTGAGAAGgtgattttttagttcaacatctataaatgttttgaggaaatgttttgttttctaggttggtatttagataatgttgtttattatggcctttatgttctattacag
|||||| || |||||||||||||| |||||||||||||| ||||| ||||| ||||||||||| ||||||||||| ||| |||||||||||||||||||||| |    |   |   |  |  || |||   ||  | ||||   |  ||||||   |    || ||     |  | |||  |   |                   
GCGTAAAAAGTTTCCTGCCACATCATTCACTGGATCTCCTGTTCTTTCTGATTCTGGATTTGATTTGTTGAACAAGCTTCTAACTTATGACCCTGAGAAGgtaaaggctacat--gagctacatgaattaatttggtaaataaatatttttctgaatattaatataagacctactattttatgcag-------------------

upper sequence: Vv01s0010g02550.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA11G37270.1 (Glycine max), 5'ss of exon 4
GCGTAAGAAATTTCCTGCCACATCTTTCACTGGATCTCCGGTTCTCTCTGACTCTGGATTTGACTTGTTGAACAAACTTTTAACTTATGACCCTGAGAAGgtgattttttagttcaacatctataaatgttttgaggaaatgttttgttttctaggttggtatttagataatgttgtttattatggcctttatgttctattacag
|||||| ||||||||||| ||||| ||||||||||| || ||||| ||||| ||||||||||| ||||||||||| ||| |||||||||||||||| ||||| |    |   | | || |   | ||| |  | |  |  |  |||||||    | ||  ||     | ||| |  |   ||||      |||   |        
GCGTAAAAAATTTCCTGCAACATCATTCACTGGATCACCAGTTCTTTCTGATTCTGGATTTGATTTGTTGAACAAGCTTCTAACTTATGACCCTGAAAAGgtaaacaatacataccacttgacttaatttagtaaatag-taatttgtttcagtgtttcata-----agaatatgatcagttatcattaatatacacag------

upper sequence: Vv01s0010g02550.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA18G01230.1 (Glycine max), 5'ss of exon 7
GCGTAAGAAATTTCCTGCCACATCTTTCACTGGATCTCCGGTTCTCTCTGACTCTGGATTTGACTTGTTGAACAAACTTTTAACTTATGACCCTGAGAAGgtgattttttagttcaacatctataaatgttttgaggaaatgttttgttttctaggttggtatttagataatgttgtttattatggcctttatgttctattacag
||  || ||||||||||| |||||  |||| ||||| || ||||| ||||| ||||||||||| ||||||||||| ||| |||||||||||||||  ||||| | |  ||  | | || |   | ||| |  | |  |    ||  | ||||   |||  |||| |||  || |    | ||||      |||   |        
GCACAAAAAATTTCCTGCAACATCAGTCACCGGATCGCCAGTTCTTTCTGATTCTGGATTTGATTTGTTGAACAAGCTTCTAACTTATGACCCTGTAAAGgtaaataattcataccacttgacttaatttagtaaatagtaatt--ggtttcagtgtt--tattaaga--atatgagctgttatcattaatatacacag------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30134929|gb|CB920267.1|CB920267
EST:     ACTCTGGATTTGACTTGTTGAACAAACTTTTAACTTATGACCCTGAGAAG                         AGGATTACAGCTGAAGCTGCTCTTAACCATGATTGGTTCCGCGAAGTTCCT
genomic: ACTCTGGATTTGACTTGTTGAACAAACTTTTAACTTATGACCCTGAGAAGgtgatttttt ... tctattacagAGGATTACAGCTGAAGCTGCTCTTAACCATGATTGGTTCCGCGAAGTTCCT