Sequence
atgc intronic sequence ATGC exonic sequenceTCGATAGGGATGATGAATGTGGGATCTGCATGGAAACTTGCACCAAGATGGTGTTACCTAACTGTGGCCACTCTATGTGCATCTGCTGTTTTCATGACTGgtaggcatccatgaattgctttcggttttctccattccatgacattttacattatgaacaaaactgtttatgttaaatgtactcaacgttgaattgaatcacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0010g02220.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os07g17400.2 (Oryza sativa), 5'ss of exon 4
TCGATAGGGATGATGAATGTGGGATCTGCATGGAAACTTGCACCAAGATGGTGTTACCTAACTGTGGCCACTCTATGTGCATCTGCTGTTTTCATGACTGgtaggca-----tccatgaattgctttcggttttctccattccatgacattttacattatgaacaaaactgtttatgttaaatgtactcaacgttgaattgaatcacag
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TGGAAAGGGAGGATGAATGTGGGATTTGCATGGAGACATGCACCAAGATGGTTCTGCCTAATTGCAGTCATGCAATGTGCATAAAATGCTACAGGGACTGgtaaatagtattttcacaacttaattgcacttattgacagtagcaacctgcttgcaatttggatacatattctgagcctttcttttctgaactatgcagt---------
upper sequence: Vv01s0010g02220.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os07g17400.1 (Oryza sativa), 5'ss of exon 4
TCGATAGGGATGATGAATGTGGGATCTGCATGGAAACTTGCACCAAGATGGTGTTACCTAACTGTGGCCACTCTATGTGCATCTGCTGTTTTCATGACTGgtaggca-----tccatgaattgctttcggttttctccattccatgacattttacattatgaacaaaactgtttatgttaaatgtactcaacgttgaattgaatcacag
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TGGAAAGGGAGGATGAATGTGGGATTTGCATGGAGACATGCACCAAGATGGTTCTGCCTAATTGCAGTCATGCAATGTGCATAAAATGCTACAGGGACTGgtaaatagtattttcacaacttaattgcacttattgacagtagcaacctgcttgcaatttggatacatattctgagcctttcttttctgaactatgcag----------
upper sequence: Vv01s0010g02220.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G439168_T02 (Zea mays), 5'ss of exon 5
TCGATAGGGATGATGAATGTGGGATCTGCATGGAAACTTGCACCAAGATGGTGTTACCTAACTGTGGCCACTCTATGTGCATCTGCTGTTTTCATGACTGgtaggcatccatgaattgctttcggttttctccattccatgacatt--ttacattatg-aacaaaactgtttatgttaaatgtactcaacgttgaattgaatcacag-
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TGGAAAGGGAGGATGAATGCGGGATCTGCATGGAGGCATGCACCAAGATGGTCCTGCCTAATTGCAGTCATGCAATGTGCATAAAGTGCCATAGGGACTGgtaattacctctca--caattttcattatttgtat---gtgaatttggataggctatgcaacttggatatggatttcgagtctaattaaagt---gctacattttagtMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110394543|gb|EC959671.1|EC959671EST: GTGTTACCTAACTGTGGCCACTCTATGTGCATCTGCTGTTTTCATGACTG GAATGTGCGTTCTCAGTCCTGCCCTTTTTGTCGAGGCAGCCTAAAGAGAGT
genomic: GTGTTACCTAACTGTGGCCACTCTATGTGCATCTGCTGTTTTCATGACTGgtaggcatcc ... tgaatcacagGAATGTGCGTTCTCAGTCCTGCCCTTTTTGTCGAGGCAGCCTAAAGAGAGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCGATAGGGATGATGAATGTGGGATCTGCATGGAAACTTGCACCAAGATGGTGTTACCTAACTGTGGCCACTCTATGTGCATCTGCTGTTTTCATGACTGgtaggcatccatgaattgctttcggttttctccattccatgacattttacattatgaacaaaactgtttatgttaaatgtactcaacgttgaattgaatcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT