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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAAAGGGAAGATGAATGTGGAATTTGTTTGGAGCCTTGCACCAAAATGGTCTTGCCTAATTGCTGTCATGCAATGTGCATCAACTGCTACCGTGACTGgtaagttggtaactacaaggattgtattttctttattctgtctctaacactttccaactgcatacatgagattctagactgctatttttctttacactcttcctcttctttatccaaattacag

Basic information

species Vitis vinifera
transcript Vv01s0010g02200.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0010g02200.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os07g17400.2 (Oryza sativa), 5'ss of exon 4
TGAAAAGGGAAGATGAATGTGGAATTTGTTTGGAGCCTTGCACCAAAATGGTCTTGCCTAATTGCTGTCATGCAATGTGCATCAACTGCTACCGTGACTGgtaagttggtaactacaaggattgtattttctttatt--ctgtctctaac-actttccaactgcatacatgagattctagactgctatttttctttacactcttcctcttctttatccaaattacag
|| ||||||| ||||||||||| |||||  ||||| | |||||||| |||||  ||||||||||| |||||||||||||||| || |||||| | ||||||||| |  |||  | ||    ||  |||    |||||  | ||  | | |  ||| | |  || ||||||   |||||     ||  || || | |  ||| | |                      
TGGAAAGGGAGGATGAATGTGGGATTTGCATGGAGACATGCACCAAGATGGTTCTGCCTAATTGCAGTCATGCAATGTGCATAAAATGCTACAGGGACTGgtaaat-agtattttcacaactta-attgcacttattgacagtagcaacctgcttgcaatttggatacat---attctga---gcctttcttttctgaactatgcagt-------------------

upper sequence: Vv01s0010g02200.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os07g17400.1 (Oryza sativa), 5'ss of exon 4
TGAAAAGGGAAGATGAATGTGGAATTTGTTTGGAGCCTTGCACCAAAATGGTCTTGCCTAATTGCTGTCATGCAATGTGCATCAACTGCTACCGTGACTGgtaagttggtaactacaaggattgtattttctttatt--ctgtctctaac-actttccaactgcatacatgagattctagactgctatttttctttacactcttcctcttctttatccaaattacag
|| ||||||| ||||||||||| |||||  ||||| | |||||||| |||||  ||||||||||| |||||||||||||||| || |||||| | ||||||||| |  |||  | ||    ||  |||    |||||  | ||  | | |  ||| | |  || ||||||   |||||     ||  || || | |  ||| | |                      
TGGAAAGGGAGGATGAATGTGGGATTTGCATGGAGACATGCACCAAGATGGTTCTGCCTAATTGCAGTCATGCAATGTGCATAAAATGCTACAGGGACTGgtaaat-agtattttcacaactta-attgcacttattgacagtagcaacctgcttgcaatttggatacat---attctga---gcctttcttttctgaactatgcag--------------------

upper sequence: Vv01s0010g02200.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os01g67850.1 (Oryza sativa), 5'ss of exon 4
TGAAAAGGGAAGATGAATGTGGAATTTGTTTGGAGCCTTGCACCAAAATGGTCTTGCCTAATTGCTGTCATGCAATGTGCATCAACTGCTACCGTGACTGgtaagttggtaactacaaggattgtattttctttattctgtctctaacactttccaactgcatacatgagattc-tagactgctatttttct-ttacactcttcctcttctttatccaaattacag
   | ||||||||||| || || ||||| |||||| |||||||||| |||||| | || ||||||   ||||| |||||||||||||| || || ||||||||| ||| |  ||   |   |||  | | | ||           |  | ||    | |  ||| |||| |  | |  |  | ||||| ||  ||| |  |  | | |                  
ACGAGAGGGAAGATGAGTGCGGCATTTGCTTGGAGACTTGCACCAAGATGGTCCTTCCAAATTGCAACCATGCCATGTGCATCAACTGTTATCGAGACTGgtaatttgctccctctcacccttgcttatccgtt---------tgagtatttaagtagtatatatatgatacccgtgcaacgatatttatcaattataggccccatgtc-----------------

upper sequence: Vv01s0010g02200.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G171967_T01 (Zea mays), 5'ss of exon 4
TGAAAAGGGAAGATGAATGTGGAATTTGTTTGGAGCCTTGCACCAAAATGGTCTTGCCTAATTGCTGTCATGCAATGTGCATCAACTGCTACCGTGACTGgtaagttggtaactacaaggattgtattttctttattctgtctctaacactttccaactgcatacatgagattctagactgctatttttctttacactcttcctcttctttatccaaattacag
|| ||||||| |||||||| || |||||  ||||| | |||||||| |||||| ||||||||||| |||||||||||||||| || |||||  | ||||||||| ||       ||||   ||  ||| ||| |||      |  ||||        ||    |  |  |||  | || | | | | |  || |    || | | ||  |              
TGGAAAGGGAGGATGAATGCGGGATTTGCATGGAGGCATGCACCAAGATGGTCCTGCCTAATTGCAGTCATGCAATGTGCATAAAGTGCTATAGGGACTGgtaa-ttacctctcacaat--tttcattatctgtatgtgaatttgaaca------ggctatgcaatttggata-tggatttcgagtctaattaaagtgctacattttagt--------------

upper sequence: Vv01s0010g02200.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G439168_T02 (Zea mays), 5'ss of exon 5
TGAAAAGGGAAGATGAATGTGGAATTTGTTTGGAGCCTTGCACCAAAATGGTCTTGCCTAATTGCTGTCATGCAATGTGCATCAACTGCTACCGTGACTGgtaagttggtaactacaaggattgtattttctttattctgtctctaacactttccaactgcatacatgagattctagactgctatttttctttacactcttcctcttctttatccaaattacag
|| ||||||| |||||||| || || ||  ||||| | |||||||| |||||| ||||||||||| |||||||||||||||| || ||| |  | ||||||||| ||       ||||   |  |  ||| | | |    |     |  || | |||||    | |||   ||| || ||  | |       |||| | |                        
TGGAAAGGGAGGATGAATGCGGGATCTGCATGGAGGCATGCACCAAGATGGTCCTGCCTAATTGCAGTCATGCAATGTGCATAAAGTGCCATAGGGACTGgtaa-ttacctctcacaattttcattatttgtatgtgaatttggataggctatgcaact-tggatatggatttcgagtctaat-taaagtgctacattttagt---------------------

upper sequence: Vv01s0010g02200.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G058450_T01 (Zea mays), 5'ss of exon 4
TGAAAAGGGAAGATGAATGTGGAATTTGTTTGGAGCCTTGCACCAAAATGGTCTTGCCTAATTGCTGTCATGCAATGTGCATCAACTGCTACCGTGACTGgtaagttggtaactacaaggattgtattttctttattctgtctctaacactttc-caactgcatacatga--gattctagactgctatttttctttacactcttcctcttctttatccaaattacag
   | ||||| ||||| ||||| |||||  ||||| | |||||||| |||||| | || ||||||   ||||| |||||||||||||| ||||| ||||||||  ||| |  ||       |||  | | | || |   |  | ||  | ||   ||||   |||  |||  ||  || ||  | |||   |     | |                           
ATGACAGGGAGGATGAGTGTGGCATTTGCCTGGAGACCTGCACCAAGATGGTCCTTCCGAATTGCAACCATGCCATGTGCATCAACTGTTACCGAGACTGgta--ttgctccctgtcgctcttgcttatccgtt-tggggggtgtattatttaagcaacaatatatctgactgagcctggatcgttatcagttagggccccga------------------------

upper sequence: Vv01s0010g02200.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA08G10630.1 (Glycine max), 5'ss of exon 4
TGAAAAGGGAAGATGAATGTGGAATTTGTTTGGAGCCTTGCACCAAAATGGTCTTGCCTAATTGCTGTCATGCAATGTGCATCAACTGCTACCGTGACTGgtaagttggtaactacaaggattgtattttctttattctgtctctaacactttccaactgcatacatgagattctagactgctatttttctttacactcttcctcttctttatccaaattacag
|| |||| |||||||||||||| || || || |||||||||||||||||||| |||||||||||||||||||| ||||| ||||| ||||||||  | ||||| ||    |  ||  ||   || || ||   |   ||  || ||    | | ||| |   |  || |   | |    ||  |    |  |  ||||     ||                   
TGGAAAGAGAAGATGAATGTGGCATATGCTTAGAGCCTTGCACCAAAATGGTTTTGCCTAATTGCTGTCATGCCATGTGTATCAAATGCTACCGCAAGTGgtatgtattca--tattagacatgcatatttagtcgccttacttta----tattcaaattggtttatcatcattttttttgtgaacaatggtcgcactgaggttcg------------------

upper sequence: Vv01s0010g02200.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA05G27640.2 (Glycine max), 5'ss of exon 4
TGAAAAGGGAAGATGAATGTGGAATTTGTTTGGAGCCTTGCACCAAAATGGTCTTGCCTAATTGCTGTCATGCAATGTGCATCAACTGCTACCGTGACTGgtaagttggtaactacaaggattgtattttctttattctgtctctaacactttccaactgcatacatgagattctagactgctatttttctttacactcttcctcttctttatccaaattacag
|| |||| |||||||||||||| || || || |||||||||||||||||||| |||||||||||||||||||| ||||| ||||| ||||||||  | ||||| ||    |  ||  |    || |  ||   |  |||  || ||    | | ||| |   |  || |   |   |  || | | | | | |||| |  |     |                 
TGGAAAGAGAAGATGAATGTGGGATATGCTTAGAGCCTTGCACCAAAATGGTTTTGCCTAATTGCTGTCATGCCATGTGTATCAAATGCTACCGCAAGTGgtatgtattca--tattaaacatgcacatttagtcgtctaactgta----tgttcaaattggtctatcatcattgtgtgtg-tgtgtgtgtgtacaatgattgcact-----------------

upper sequence: Vv01s0010g02200.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA11G37510.1 (Glycine max), 5'ss of exon 4
TGAAAAGGGAAGATGAATGTGGAATTTGTTTGGAGCCTTGCACCAAAATGGTCTTGCCTAATTGCTGTCATGCAATGTGCATCAACTGCTACCGTGACTGgtaagttggtaactacaaggattgtattttctttattctgtctctaacactttccaactgcatacatgagattctagactg--ctatttttctttacactcttcctcttctttatccaaattacag
|| |||| |||||||||||||| ||||| || |||||||||||||||||||| || |||  |||||| ||||| ||||| || || ||||||||  | ||||||      || ||| |  |||      | |||||  |        ||  |||||| |  |||    |    | | | ||   ||| ||| || |||||  | ||   ||| || ||| || |||
TGCAAAGAGAAGATGAATGTGGTATTTGCTTAGAGCCTTGCACCAAAATGGTTTTACCTGGTTGCTGCCATGCCATGTGTATTAAATGCTACCGCAAGTGgtaa-----caaataccaacatt------tgtttatggt--------caacttccaaatttatatgccattaccaacaatggtttatcttttttgacacttgtgctggactt-attcaacttgcag

upper sequence: Vv01s0010g02200.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA18G01460.2 (Glycine max), 5'ss of exon 5
TGAAAAGGGAAGATGAATGTGGAATTTGTTTGGAGCCTTGCACCAAAATGGTCTTGCCTAATTGCTGTCATGCAATGTGCATCAACTGCTACCGTGACTGgtaagttggtaactacaaggattgtattttctttattctgtctctaacactttccaactgcatacatgagattctagactgct-atttttctttacactcttcctcttctttatccaaattacag
|| |||| |||||||||||||| ||||| || |||||||||||||||||||| || |||  |||||| ||||| ||||| || || ||||||||  | ||||||     |||| |||          ||| |||||  |        ||  |||||| |  |||  ||  |||    |  ||| || ||| ||  ||||  | ||   ||| || ||| || |||
TGCAAAGAGAAGATGAATGTGGGATTTGCTTAGAGCCTTGCACCAAAATGGTTTTACCTGGTTGCTGCCATGCCATGTGTATTAAATGCTACCGCAAGTGgtaa--caataacaaca----------tttgtttatggt--------caacttccaaatttata--tgccattaccaatggcttatcttttttgtcacttgttctggactt-attcaacttgcag

upper sequence: Vv01s0010g02200.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT1G13195.1 (Arabidopsis thaliana), 5'ss of exon 4
TGAAAAGGGAAGATGAATGTGGAATTTGTTTGGAGCCTTGCACCAAAATGGTCTTGCCTAATTGCTGTCATGCAATGTGCATCAACTGCTACCGTGACTGgtaagttggtaactacaaggattgtattttctttattctgtctctaacactttccaactgcatacatgagattct--agactgctatttttctttacactcttcctcttctttatccaaattacag
|  |  | ||||| ||||| || || ||||| ||  |||||||||||||||| ||||||||||| || ||| | ||||||||||| ||||| ||  | |||||  |    |   |||    ||   ||||     || |    || |  | ||   |||| ||      ||||||  |  ||||                                          
TAGAGCGTGAAGAAGAATGCGGTATCTGTTTAGAAACTTGCACCAAAATGGTGTTGCCTAATTGTTGCCATTCTATGTGCATCAAATGCTATCGCAATTGgtatatacacacacacactttttagtttttagacctttttgacctgatgcattt--actgaatctcgttgattctcaaatctgcag----------------------------------------