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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTATCCAACATATCTTACTTGATATGCCAAGTCTTGCTTTCTTCACAACCTATGCTCTTTTGGTATTGTTCTGGGCAGAAATATACTATCAGgttaggcataacttatgggtcttactcttttgtatgtttgtattgttattagttcgtctcattattttctcaacatgacag

Basic information

species Vitis vinifera
transcript Vv01s0010g01740.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0010g01740.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os03g02850.2 (Oryza sativa), 5'ss of exon 4
ATTATCCAACATATCTTACTTGATATGCCAAGTCTTGCTTTCTTCACAACCTATGCTCTTTTGGTATTGTTCTGGGCAGAAATATACTATCAGgttaggcataactt-atgggtcttactctt-----ttgtatgtttgtattgttattagttcgtctcattattttctcaacatgacag
 |  | |||||| |  |  ||||| | ||  | ||||| |||||||||||||||||||| || ||  | |||||||| || || ||||||||||||||   ||  |  ||   | ||  | ||      ||  ||||| | || | ||| |||| |      ||||  |           
GTATTTCAACATGTGCTCATTGATTTTCCGGGGCTTGCATTCTTCACAACCTATGCTCTGTTAGTGCTCTTCTGGGCTGAGATTTACTATCAGgttagttttacttggatatattttggttttgtcccatgggtgtttttgttctcattggttcatgatggcatttgttag---------

upper sequence: Vv01s0010g01740.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT2G02180.1 (Arabidopsis thaliana), 5'ss of exon 4
ATTATCCAACATATCTTACTTGATATGCCAAGTCTTGCTTTCTTCACAACCTATGCTCTTTTGGTATTGTTCTGGGCAGAAATATACTATCAGgt------taggcataacttatgggtcttactcttt-tgtatgtttgtattgttatta-gttcgtctcattattttctcaacatgacag
||| | ||||||||||| |||||||| |||||||||||||||||||| |||||||||||| ||||  | |||||||| ||||| || ||||||||      ||   |  |  ||||||| |   | ||| |  ||| || | | ||| | |  ||   || |  | | | |  |   |||||
ATTCTGCAACATATCTTGCTTGATATTCCAAGTCTTGCTTTCTTCACCACCTATGCTCTTCTGGTTCTTTTCTGGGCTGAAATTTATTATCAGgtagtttctaatgagtatctatgggtttctttttttgtcaatgcttctttggttttgatattttacttaacactcttttgattggacag

upper sequence: Vv01s0010g01740.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT1G14530.1 (Arabidopsis thaliana), 5'ss of exon 4
ATTATCCAACATATCTTACTTGATATGCCAAGTCTTGCTTTCTTCACAACCTATGCTCTTTTGGTATTGTTCTGGGCAGAAATATACTATCAGgttaggcataact---tatgggtcttactcttttgtatgtttgtattgttattagttcgtctcattattttctcaacatgacag
||| | |||||||||||||||||||| |||||||||||||||||||| || ||||| ||| ||||  | || |||||||| || ||||| ||||| |  | | | |   |||   | ||    ||   | |   || |||||| ||  |   |  |  ||| ||  ||         
ATTCTGCAACATATCTTACTTGATATTCCAAGTCTTGCTTTCTTCACTACATATGCGCTTCTGGTTCTCTTTTGGGCAGAGATTTACTACCAGgtaaaccttgattctgtatatattttcaatttagtttttcctgcattgttgttgatat-ttactctatcttggcag--------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349816624|gb|FQ399613.1|FQ399613
EST:     TCACGACCTATGCTCTTTTGGTATTGTTCTGGGCAGAAATATACTATCAG                         GCACGTGCTGTATCTACTGATGGACTGAGACCAAGTTTCTACACAATTAAT
genomic: TCACAACCTATGCTCTTTTGGTATTGTTCTGGGCAGAAATATACTATCAGgttaggcata ... aacatgacagGCACGTGCTGTATCTACTGATGGACTGAGACCAAGTTTCTACACAATTAAT
EST: gi|110411137|gb|EC976839.1|EC976839
EST:     TCACAACCTATGCTCTTTTGGTATTGTTCTGGGCAGAAATATACTATCAG                         GCACGTGCTGTATCTACTGATGGACTGAGACCAAGTTTCTACACAATTAAT
genomic: TCACAACCTATGCTCTTTTGGTATTGTTCTGGGCAGAAATATACTATCAGgttaggcata ... aacatgacagGCACGTGCTGTATCTACTGATGGACTGAGACCAAGTTTCTACACAATTAAT
EST: gi|349823327|gb|FQ402526.1|FQ402526
EST:     TCACGACCTATGCTCTTTTGGTATTGTTCTGGGCAGAAATATACTATCAG                         GCACGTGCTGTATCTACTGATGGACTGAGACCAAGTTTCTACACAATTAAT
genomic: TCACAACCTATGCTCTTTTGGTATTGTTCTGGGCAGAAATATACTATCAGgttaggcata ... aacatgacagGCACGTGCTGTATCTACTGATGGACTGAGACCAAGTTTCTACACAATTAAT
EST: gi|161718299|gb|FC064760.1|FC064760
EST:     TCACGACCTATGCTCTTTTGGTATTGTTCTGGGCAGAAATATACTATCAG                         GCACGTGCTGTATCTACTGATGGACTGAGACCAAGTTTCTACACAATTAAT
genomic: TCACAACCTATGCTCTTTTGGTATTGTTCTGGGCAGAAATATACTATCAGgttaggcata ... aacatgacagGCACGTGCTGTATCTACTGATGGACTGAGACCAAGTTTCTACACAATTAAT
EST: gi|294965642|gb|GW837241.1|GW837241
EST:     TCACAACCTATGCTCTTTTGGTATTGTTCTGGGCAGAAATATACTATCAG                         GCACGTGCTGTATCTACTGATGGACTGAGACCAAGTTTCTACACAATTAAT
genomic: TCACAACCTATGCTCTTTTGGTATTGTTCTGGGCAGAAATATACTATCAGgttaggcata ... aacatgacagGCACGTGCTGTATCTACTGATGGACTGAGACCAAGTTTCTACACAATTAAT
EST: gi|349809177|gb|FQ398950.1|FQ398950
EST:     TCACGACCTATGCTCTTTTGGTATTGTTCTGGGCAGAAATATACTATCAG                         GCACGTGCTGTATCTACTGATGGACTGAGACCAAGTTTCTACACAATTAAT
genomic: TCACAACCTATGCTCTTTTGGTATTGTTCTGGGCAGAAATATACTATCAGgttaggcata ... aacatgacagGCACGTGCTGTATCTACTGATGGACTGAGACCAAGTTTCTACACAATTAAT