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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAATTGCAGCAGGAATGAACCCCATTCAAATTTCTCGTGGGATTGAGAAGACTGCAATGGCCCTTGTTTCTGAACTCAAATTGATGTCGAGAGAGgtatcaagactatttcttatattttcatgaaaaaaattataattcagaaaattgttaaaaattgtaagcattgaaacaaagagaatatattgtatttgggtattaatattatctttaagaattatataatattacctggaattgactgccaaataattataaattgcag

Basic information

species Vitis vinifera
transcript Vv01s0010g00920.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0010g00920.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA02G13980.1 (Glycine max), 5'ss of exon 4
GTAATTGCAGCAGGAATGAACCCCATTCAAATTTCTCGTGGGATTGAGAAGACTGCAATGGCCCTTGTTTCTGAACTCAAATTGATGTCGAGAGAGgt-atcaagactatttcttatattttcatgaaaaaaattataat--tcagaaaattgttaaaaattgtaagcattgaaacaaaga--gaatatattgtatttgggtattaat-----attatctttaagaattatataatattacctggaattgactgccaaataattataaattgcag
|| |||||||| |||||||| ||  |||||||| ||||||||||||||||||| |||  ||| |||||||||||||||| ||||||||| ||||| || |     |||  || ||||  | |  |  ||||       ||  |   ||| |||  ||  |   | |  | ||   || |    || |  |||||  ||   |  |        ||  |   | | | ||  | | |  |  ||| |    ||  |  | |   |  |  ||| ||
GTTATTGCAGCTGGAATGAATCCTGTTCAAATTGCTCGTGGGATTGAGAAGACAGCAGCGGCACTTGTTTCTGAACTCAGATTGATGTCAAGAGAAgtgagttctactcattattattctgttttctaaaactcctggatgattgaaaatttgagaatcaaaatgaatactgctgcagatgttgatttaattgtgctttttttctgcctgccaatcgttgcttatagttggaaagt-ctggctgaatacaacaac--attggctgcac-ttgtag

upper sequence: Vv01s0010g00920.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA01G09520.1 (Glycine max), 5'ss of exon 4
GTAATTGCAGCAGGAATGAACCCCATTCAAATTTCTCGTGGGATTGAGAAGACTGCAATGGCCCTTGTTTCTGAACTCAAATTGATGTCGAGAGAGgtatcaagactatttcttatattttcatgaaaaaaattataattcagaaaattgttaaaaattgtaagcattgaaacaaagagaatata-ttgt--atttgggtattaatattatctttaagaattatataatattacctggaattg---actgccaaataattataaattgcag--------------------
|| |||||||| |||||||| ||  |||||||| ||||||| ||||||||||| ||||  || |||||||||||||||| ||||||||| ||||| |||  |   ||| |  |||  ||||    |||| ||  | |  |      ||| || |||||| | || ||   ||  || |  || |   ||   || | | | | | | |  | |||      |    | | || | |  | |||   ||||  ||||  |  | ||||  |                     
GTTATTGCAGCTGGAATGAATCCTGTTCAAATTGCTCGTGGCATTGAGAAGACAGCAACAGCGCTTGTTTCTGAACTCAGATTGATGTCAAGAGAAgta--agttctactcattagtttttttaaaaaagaaaaacacct----ggattattgaaaattttgagaatcacaatgaaaattatctggctgcagatgttgatttaattgtgcttttttctgcctgccaattgttgcttatagttggaaactggaaaatcttgctgaattcaacaacattggctgcacttgtag