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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTATGATTTTCCTTGTATCCATTCTATGGACCCGAATGACTTGCTTgttcatgaatgtgatgtcctcattccatgcgcattaggtggagttctcaacaagtatgtgacatgaccacttagctgtgaaccttataaactctcatatttttgggtccaataacttaatcaaactatgtttccttcttgccctgcattctgatatattgcaaag

Basic information

species Vitis vinifera
transcript Vv00s1491g00010.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s1491g00010.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os04g45970.1 (Oryza sativa), 5'ss of exon 6
ATTATGATTTTCCTTGTATCCATTCTATGGACCCGAATGACTTGCTTgttcatgaatgtgatgtcctcattccatgcgcattaggtggagttctcaacaagtatgtgaca-tgaccacttagctgtgaaccttataaactctcatatttttgggtccaataacttaatcaaactatgtttccttcttgccctgcattctgatatattgcaaag
   | ||||||| |  |    |    |||||  |    ||  | || || |||||||| ||||| ||||| |||||||| ||||||||||| ||||||| |||   |  | || |||      |||  | | |  ||  |        | || ||    || |    ||     |||  || ||    | |||   |    |   ||||    
TGAAAGATTTTCATGATGCGGAAGTCATGGATTCTTCAGAGCTACTAGTGCATGAATGCGATGTTCTCATCCCATGCGCTTTAGGTGGAGTGCTCAACAGgtaaaagctagtgtcca------tgtcgatccttaaattttctgccaatatgagttgtttatcggggtcgggg-atgactc-ttgaaactctgtccttacctg-gttgc----

upper sequence: Vv00s1491g00010.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os02g43470.1 (Oryza sativa), 5'ss of exon 6
ATTATGATTTTCCTTGTATCCATTCTATGGACCCGAATGACTTGCTTgttcatgaatgtgatgtcctcattccatgcgcattaggtggagttctcaacaagtatgtgacatgaccacttagctgtgaaccttataaactctcatatttttgggtccaataacttaatcaa-actatgtttccttcttgccctgcattctgatatattgcaaag
   | || ||     ||    |   ||||||| |    ||  ||||||| |||||||||||||| ||| | || ||||| || ||||| |||||||||| ||| |      |      |   | |||   | | | | |||| |||| | |       ||| || ||  |   | |   | | | ||  ||||  |||  |||| |       
TGGAGGACTTCTACGGTGCAGAAGTTATGGACGCTGCAGAGCTGCTTGTGCATGAATGTGATGTTCTCGTCCCGTGCGCCTTGGGTGGTGTTCTCAACAGgtaagaacggcgcattgctgcatttga---taaaagaatctcgtattatgg-------taatttgattgatgtttttgctacattttcacctggtttccaatatctcatt---

upper sequence: Vv00s1491g00010.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA01G41310.1 (Glycine max), 5'ss of exon 6
ATTATGATTTTCCTTGTATCCATTCTATGGACCCGAATGACTTGCTTgttcatgaatgtgatgtcctcattccatgcgcattaggtggagttctcaacaagtatgt-----gacatgaccacttagctgtgaaccttataaactctcatatttttgg--gtccaataacttaatcaaactatgtttccttcttgccctgc--attctgatatattgcaaag-------------
   | || ||  |  |     ||   ||||| ||  |||| ||||||||||||||||||||||| ||||| || || || || || ||||||||||||||||||||       |     ||| || || ||  | | | |||   |||   ||   |   || || || |  ||    || ||||   ||   |   |    ||| | |  | | || ||              
TGAAGGAATTCTCAGGAGCAGATATCATGGATCCTGATGAATTGCTTGTTCATGAATGTGATGTTCTCATCCCTTGTGCCTTGGGAGGAGTTCTCAACAAgtatgtttattatctaagtcacgtatctatgttcatcagaaatcatcagcattgaagttatctaacaagtacattttgct-tgttcatttaaagttgtatttatttttaattttggctaaacttaattttgtag

upper sequence: Vv00s1491g00010.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA05G05460.1 (Glycine max), 5'ss of exon 6
ATTATGATTTTCCTTGTATCCATTCTATGGACCCGAATGACTTGCTTgttcatgaatgtgatgtcctcattccatgcgcattaggtggagttctcaacaagtatgtgacatgaccacttagctgtgaaccttataaactctcatatttttgg-gtccaataacttaatcaaactatgtttccttcttgccctgcattctgatatattgcaaag------
   | || || ||  ||    |  | ||||| || ||||| |||||| |||||||||||||||| || || || || || || |||||||||||||||||||||||       |  ||||  ||| | ||||| ||    ||| ||  |  | ||  || |   |  |    |    || ||  ||| |  ||||     || || ||| ||       
TGAAGGACTTCCCAGGTGCAGAAGCAATGGATCCAAATGAATTGCTTCTTCATGAATGTGATGTTCTTATCCCTTGTGCCTTGGGTGGAGTTCTCAACAAgtatgt-------ctgctta--tgtca-ccttaaaa----tcaaatcatcagtgttaaagagtgtgttttcgccg-attcccaccttccaatgcac----atttaatgctaatccttct

upper sequence: Vv00s1491g00010.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA11G04090.1 (Glycine max), 5'ss of exon 8
ATTATGATTTTCCTTGTATCCATTCTATGGACCCGAATGACTTGCTTgttcatgaatgtgatgtcctcattccatgcgcattaggtggagttctcaacaagtatgt---------gacatgaccacttagctgtgaaccttataaactctcatatttttgggtccaa-taacttaatcaaactatgtttccttcttgccctgcattctgat-atattgcaaag------------------------
   |||    |  ||| |   |||||  ||| | || ||| |||||||||||||||||| |||| ||||| || || |  || || ||||||||||||||||||||           |     ||| || || ||  | | | |||   |||    |  |  |  || | |  |||  |    || || | |  |         ||||  | || ||  |||                         
GCAATGGAGAT--TTGAAGGAATTCTCAGGAGCAGA-TGAATTGCTTGTTCATGAATGTCATGTTCTCATCCCTTGTGATTTGGGAGGAGTTCTCAACAAgtatgtttacttattatctaagtcacctatctatgttcatcagaaatcatcaatcatcagcattgaagttatctaagaagtacattttgcttgttcatttaaagttctatttattttttaaatttttggctaaacttaattttgaag

upper sequence: Vv00s1491g00010.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA17G15740.1 (Glycine max), 5'ss of exon 7
ATTATGATTTTCCTTGTATCCATTCTATGGACCCGAATGACTTGCTTgttcatgaatgtgatgtcctcattccatgcgcattaggtggagttctcaacaagtatgtgacatgaccacttagctgtgaacc----ttataaactctcatatttttgggtccaataactta-atcaaactatgtttccttcttgccctgcattctgatatattgcaaag
   | || || ||  ||    |  | ||||| ||  |||| ||||||||||||||||| ||||| ||  | || || || || ||||||||||| |||||||||||   ||| | | ||  |  | ||      | || | |  |||    | ||  | |      |   |     | |||     ||   ||    | ||||              
TGAAGGACTTCCCAGGTGCAGAAGCCATGGATCCAGATGAATTGCTTGTTCATGAATGCGATGTTCTTGTCCCTTGTGCCTTGGGTGGAGTTCTAAACAAgtatgt---atgcctatttcaccttaaaatcaaatcatcagcgttcaagagtgtgttttcgccggttcccactttccaatgcacatttaacgctagtccttct--------------