1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TTCTCTGGAGGATGTGATTGTGTATTCGCATGGGTGTGCTACGTTTGATCTTCCAGATGATGTCGCCAGAACCATCCCTGGTGCCATAGCTCATCCACAGgtatttccaggacatgcattttctttcctggctgagtttgctggtatataagaacgtatttttacttaaattatatagtaattgaagtaatgatctctat...
species | Vitis vinifera |
transcript | Vv00s1364g00010.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTCCAGATGATGTCGCCAGAACCATCCCTGGTGCCATAGCTCATCCACAG GAACTGATGCATCACATAGGCCTATACATGGCCAAGGGAAGGGGAGCCAAGEST: gi|110395741|gb|EC961412.1|EC961412
genomic: TTCCAGATGATGTCGCCAGAACCATCCCTGGTGCCATAGCTCATCCACAGgtatttccag ... tctgtggcagGAACTGATGCATCACATAGGCCTATACATGGCCAAGGGAAGGGGAGCCAAG
EST: TTCCAGATGATGTCGCCAGAACCATCCCTGGTGCCATAGCTCATCCACAG GAACTGATGCATCACATAGGCCTATACATGGCCAAGGGAAGGGGAGCCAAGEST: gi|110379917|gb|EC945142.1|EC945142
genomic: TTCCAGATGATGTCGCCAGAACCATCCCTGGTGCCATAGCTCATCCACAGgtatttccag ... tctgtggcagGAACTGATGCATCACATAGGCCTATACATGGCCAAGGGAAGGGGAGCCAAG
EST: TTCCAGATGATGTCGCCAGAACCATCCCTGGTGCCATAGCTCATCCACAG GAACTGATGCATCACATAGGCCTATACATGGCCAAGGGAAGGGGAGCCAAGEST: gi|77581503|gb|DV219696.1|DV219696
genomic: TTCCAGATGATGTCGCCAGAACCATCCCTGGTGCCATAGCTCATCCACAGgtatttccag ... tctgtggcagGAACTGATGCATCACATAGGCCTATACATGGCCAAGGGAAGGGGAGCCAAG
EST: TTCCAGATGATGTCGCCAGAACCATCCCTGGTGCCATAGCTCATCCACAG GAACTGATGCATCACATAGGCCTATACATGGCCAAGGGAAGGGGAGCCAAG
genomic: TTCCAGATGATGTCGCCAGAACCATCCCTGGTGCCATAGCTCATCCACAGgtatttccag ... tctgtggcagGAACTGATGCATCACATAGGCCTATACATGGCCAAGGGAAGGGGAGCCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCTCTGGAGGATGTGATTGTGTATTCGCATGGGTGTGCTACGTTTGATCTTCCAGATGATGTCGCCAGAACCATCCCTGGTGCCATAGCTCATCCACAGgtatttccaggacatgcattttctttcctggctgagtttgctggtatataagaacgtatttttacttaaattatatagtaattgaagtaatgatctctat
- - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caggaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaagtaa