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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAACATTGTGGAGCTATTACAGAATCTGTTGTTCGCAATTTTACTCGCCATATTCTTTCTGGGCTGGCTTACTTACACAGCACAAAGACAATACACAGgtaacaataggattattattattattattattattattatttaccagagtgatgaaattaatctcagaacacactcatattaacaaaggagagtatcgaattgcatcttgttaaaatttgcag

Basic information

species Vitis vinifera
transcript Vv00s1194g00010.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s1194g00010.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA05G10050.1 (Glycine max), 5'ss of exon 4
GTGAACATTGTGGAGCTATTACAGAATCTGTTGTTCGCAATTTTACTCGCCATATTCTTTCTGGGCTGGCTTACTTACACAGCACAAAGACAATACACAGgta--acaataggattattattattattatta--ttattattatttaccagagtgatgaaattaatctcagaacacactcatattaacaaaggagagtatc-----gaattgcatcttgtta-aaatttgcag------------------------------------------------
||||||||||||| || || |||||||||||| |||| ||||| ||||| |||||||| || ||| ||||||| ||||| |||| ||| || || || |||||     |   | ||    |  ||  || ||  ||    | |      ||| ||||| |  |      |   |    |  | || | ||| ||   | |      |||||  |  |  ||  | ||||| |                                                 
GTGAACATTGTGGTGCCATAACAGAATCTGTTATTCGGAATTTCACTCGGCATATTCTCTCAGGGTTGGCTTATTTACATAGCAAAAAAACCATTCATAGgtacattcaccagcttgaagtgcttcatactaacttgaactcaacctttagaatgatgcatatgcaactacttcgtttttgt-ttgaaaaatgattatgttttctagaattttaattcattttagatttggaactttttgtaacatgtttatttattgtttgttctcatgtatgcatatag

upper sequence: Vv00s1194g00010.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA01G39070.1 (Glycine max), 5'ss of exon 7
GTGAACATTGTGGAGCTATTACAGAATCTGTTGTTCGCAATTTTACTCGCCATATTCTTTCTGGGCTGGCTTACTTACACAGCACAAAGACAATACACAGgtaaca---------ataggattattattattattattattattattatttaccaga-----gtgatgaaatta---atctcagaacacactcatattaacaaaggagagtatcgaattgcatcttg--ttaaaatttgcag--------------------------------
||||||||||||| || || ||||||| ||||||||| ||||| || ||||| |||||||| ||  |||||||||| || |||| ||| ||||| || |||||            ||  |||   | |  | | || ||| |  | | | |||||||     | | |   ||||   |  | |  |    ||  | ||  |       | |  | ||||  || | |  ||| ||  |                                    
GTGAACATTGTGGTGCAATAACAGAATGTGTTGTTCGGAATTTCACGCGCCACATTCTTTCGGGCTTGGCTTACTTGCATAGCAAAAAAACAATTCATAGgtactggtcacctgcatgagatccgtgtc-taactagtataagaaatctctaccagatatttgcgttaccattataaaaattactagttcctttttttttctttcagaaattactaattcaatttggaattagaacatctgatgtatatattttcttttgttgtatgtgtgtag

upper sequence: Vv00s1194g00010.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA11G06200.1 (Glycine max), 5'ss of exon 8
GTGAACATTGTGGAGCTATTACAGAATCTGTTGTTCGCAATTTTACTCGCCATATTCTTTCTGGGCTGGCTTACTTACACAGCACAAAGACAATACACAGgta----------acaataggattat-tattat-tattattattattattat-----ttaccagagtgatgaaattaatctcagaacacactcat--attaacaaaggagagtatcgaattgcatc-ttgttaaaatttgcag-----------
||||||||||||| || || ||||||| ||||||||| ||||| || ||||||||||| || ||  |||||||||| || |||| ||| ||||| || |||||           ||  || | ||| ||  |  ||||    | |  |||||     |||  ||  |  |     |  | |||||    ||| ||  | |    ||  |||  |||  ||  |||  |  ||   |||||  |           
GTGAACATTGTGGTGCAATAACAGAATGTGTTGTTCGGAATTTCACGCGCCATATTCTATCAGGCTTGGCTTACTTGCATAGCAAAAAAACAATTCATAGgtactgttcacgtgcatgagaaatatctaccagatatttgcgtaaccattataaaaattattagtttttttttcattctttcagatattactaattcaatttggaactagaacatctgatgtcattatctttttcatttgttgcatgtgtgcag

upper sequence: Vv00s1194g00010.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA17G20460.1 (Glycine max), 5'ss of exon 6
GTGAACATTGTGGAGCTATTACAGAATCTGTTGTTCGCAATTTTACTCGCCATATTCTTTCTGGGCTGGCTTACTTACACAGCACAAAGACAATACACAGgt--aacaataggattattattattattatta--ttattattatttaccagagtgatgaaattaatctcagaacacactcatattaacaaaggagagtatc-----gaattgc--atcttgttaaaatttgcag------------------------------------------------
|||| |||||||| || || |||||||||||  |||| ||||| |||||||||||||| || ||| ||||||| ||||| |||| ||| ||||| || ||||  |   | | | ||    |  ||   | ||  ||    | |      ||| ||||  |  |      |   |    |  | |  | ||| ||   | |      |||||    ||    || | ||||| |                                                 
GTGATCATTGTGGTGCCATAACAGAATCTGTCATTCGGAATTTCACTCGCCATATTCTCTCAGGGTTGGCTTATTTACATAGCAAAAAAACAATTCATAGgtgcattcacaagcttgaagtgctttacactaacttgaactcaacctttagaatgatacatatgcaactacttcgtttttgt-tggaaaaatgattatgttttctagaatttttaattcattttagatttggaacattttgtcatgtgcttatttattattttttttcatgtatgcatatag

upper sequence: Vv00s1194g00010.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT5G66850.1 (Arabidopsis thaliana), 5'ss of exon 5
GTGAACATTGTGGAGCTATTACAGAATCTGTTGTTCGCAATTTTACTCGCCATATTCTTTCTGGGCTGGCTTACTTACACAGCACAAAGACAATACACAGgtaacaataggattattattattattattattattattatttaccagagtgatgaaattaatctca--gaacacactcatattaacaaaggagagtatcgaattgcatcttgttaaaatttgcag
|||| ||||| ||  | || ||||||||||||||||||||||||||||| || ||| | |||||||||||||| || ||||  | ||||||  |||| |||||| | |   | ||||| | | || | | ||  |     ||     |||| ||||  ||| |  |  |    | ||  | ||   |   |                                  
GTGATCATTGCGGCACCATGACAGAATCTGTTGTTCGCAATTTTACTCGTCACATTTTGTCTGGGCTGGCTTATTTGCACAATAAAAAGACTGTACATAGgtaa-agtcacaatattactgtaatcaatcttggtgaatattgttctagtgttgaacctaagcatattggtttccctatttttgttatcag----------------------------------