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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGAAATGTTGGGCCCTACAAGCATCTCTGTGACATTCAAGCTGGTTCAGTTGATCTGAACAGAAAAACAAATGCACTGTTTCTGATCCACAGACTAAAgtaagttttatgtttcttcctatgatttaatacttccagtaatttttggactaaagtaagttttatgttttttcgtctgatttaatacttccaatatttgtatttaccttcccattctaaataatcag

Basic information

species Vitis vinifera
transcript Vv00s0804g00020.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0804g00020.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA17G20320.1 (Glycine max), 5'ss of exon 7
CAAGAAATGTTGGGCCCTACAAGCATCTCTGTGACATTCAAGCTGGTTCAGTTGATCTGAACAGAAAAACAAATGCACTGTTTCTGATCCACAGACTAAAgtaagtt-ttat-gtttcttcctatgatttaatacttccagtaatttttggactaaagtaagttttatgttttttcgtctgatttaatacttccaatatttgtatttaccttcccattctaaataatcag
||||  | ||||| || || ||  || | |||||  || |||||    | | |||| ||||| ||| |||||||||| ||||||||||||||||| ||||||||||  |||| |||     |  | ||| | |  ||  | | ||  |   |   | |||  | |    | ||   | |  ||| |                                            
CAAGGGAAGTTGGTCCTTATAAAAATTTATGTGAAGTTAAAGCTACCACTGCTGATATGAACCGAACAACAAATGCAGTGTTTCTGATCCACAGATTAAAgtaagtagttatagttatagacagttattaactgttttgattgatgat--aatgtaggtatctatctaatcttgctgacaaattcag-------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37183652|gb|CF603006.1|CF603006
EST:     GTTGATCTGAACAGAAAAACAAATGCACTGTTTCTGATCCACAGACTAAA                         GCTCCTACTGGGGAAGCTTGCCTGTGTCAACTTAGAGGGTCTTACCCATCA
genomic: GTTGATCTGAACAGAAAAACAAATGCACTGTTTCTGATCCACAGACTAAAgtaagtttta ... aaataatcagGCTCCTACTGGGGAAGCTTGCCTGTGTCAACTTAGAGGGTCTTACCCATCA