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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAATTAAAATTCTTAGCCAACTAAAGCATCCAAACATTGTGCAGTATTTTGGTAGTGAAACAgtgagtgatccagttgcagattatggtattcatgcttaacatttgtcttgttagatttccatagtaacttaactgattaatatctcaattttatgcctatgcag

Basic information

species Vitis vinifera
transcript Vv00s0567g00010.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s1194g00010.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA11G06200.1 (Glycine max), 5'ss of exon 7
GAAATTAAAATTCTTAGCCAACTAAAGCATCCAAACATTGTGCAGTATTTTGGTAGTGAAACAgtgagtgatccagttgcagattatggtattca--tgcttaacatttgtcttgttagatttccatagtaacttaactgattaatatctcaattttatgcctatgcag-
||||||||| |||||||||| ||  | |||||||||||||||||||||| |||||| |||| ||| ||  |   | || |   | |||||  | |  ||| ||| |||  || |      | |  |||| |||||  || | ||||||||     || ||  |   |   
GAAATTAAAGTTCTTAGCCATCTGCAACATCCAAACATTGTGCAGTATTATGGTAGCGAAATAgtaaggaag--aattcctattcatggtgattagttgcctaaaattattcat------tatttatag-aactt--cttactaatatctttgggttgtgttttaactag

upper sequence: Vv00s1194g00010.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA01G39070.1 (Glycine max), 5'ss of exon 6
GAAATTAAAATTCTTAGCCAACTAAAGCATCCAAACATTGTGCAGTATTTTGGTAGTGAAACAgtgagtga----tccagttgcagattatggtattcatgcttaacatttgtcttgttagatttccatagtaacttaactgattaatatctcaattttatgcctatgcag-
||||||||| |||||||||| ||  | ||||||||||| |||||||||| |||||| |||| ||| ||  |    |||  ||   ||||| | | |  | | |||||  || |||   ||||  | |  |  || |||||    ||||||||     || ||  |   |   
GAAATTAAAGTTCTTAGCCATCTGCAACATCCAAACATCGTGCAGTATTATGGTAGCGAAATAgtaaggaagaattcctattcatgatta-gttgtctaagattaaccattatcta--tagaactgccca-caaattaaccttctaatatctttgggttgtgttttgactag

upper sequence: Vv00s1194g00010.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT5G66850.1 (Arabidopsis thaliana), 5'ss of exon 4
GAAATTAAAATTCTTAGCCAACTAAAGCATCCAAACATTGTGCAGTATTTTGGTAGTGAAACAgtgagtgatccagttgcagattatggtattcatgcttaacatttgtcttgt-tagatttccatagtaacttaactga---ttaatatctcaattttatgcctatgcag------
|| || ||| |||| ||  | ||  | ||||||||||||||||||||||||||||| || ||||||||| ||| |  ||    ||||  ||| |    || |||| | | |  | ||  |  |||  | |   |  ||||   || ||    ||||| | ||  | ||||       
GAGATCAAACTTCTAAGTAACCTTCAACATCCAAACATTGTGCAGTATTTTGGTAGCGAGACAgtgagtaatcaatctgt---ttata-tatcctctgtttacatatatataatctacctacccaaggcagtgtggctgaaaattcattgagcaattctctgattgtgcatgtacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161712085|gb|FC061457.1|FC061457
EST:     TTAGCCAACTAAAGCATCCAAACATTGTGCAGTATTTTGGTAGTGAAACA                         GTTGAAGACCGGCTTTATATATACCTGGAATATGTTCATCCTGGTTCAATT
genomic: TTAGCCAACTAAAGCATCCAAACATTGTGCAGTATTTTGGTAGTGAAACAgtgagtgatc ... gcctatgcagGTTGAAGACCGGCTTTATATATACCTGGAATATGTTCATCCTGGTTCAATT
EST: gi|110689010|gb|EE067915.1|EE067915
EST:     TTAGCCAACTAAAGCATCCAAACATTGTGCAGTATTTTGGTAGTGAAACA                         GTTGAAGACCGGCTTTATATATACCTGGAATATGTTCATCCTGGTTCAATT
genomic: TTAGCCAACTAAAGCATCCAAACATTGTGCAGTATTTTGGTAGTGAAACAgtgagtgatc ... gcctatgcagGTTGAAGACCGGCTTTATATATACCTGGAATATGTTCATCCTGGTTCAATT