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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAACGAAGGCTGGTCAAGAACTTAAAGCATATGCACCACTTACAATTGTGTGTGATGGTTGCTTCTCAAATTTGCGTCGCTCTCTTTGTAACCCTAAGgtgaagtgctctcttaaccttcttaatactttccttggttggttacttaaatattcttttgtgaaatgaccattggtgatactttctacattttcatctcatcctctgaatctggcacacagttcaattttttcccatgaaacaaacttattcattttttaaactttttacag

Basic information

species Vitis vinifera
transcript Vv00s0525g00020.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0525g00020.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA18G14860.1 (Glycine max), 5'ss of exon 4
CAAAACGAAGGCTGGTCAAGAACTTAAAGCATATGCACCACTTACAATTGTGTGTGATGGTTGCTTCTCAAATTTGCGTCGCTCTCTTTGTAACCCTAAGgt-gaagtgctctct-taaccttcttaatactttccttggttggttacttaaatattcttttgtgaaatgaccattggtgatactttctacattttcatctcatcctctgaatctggcacacagttcaattttttcccatgaaacaaacttattcattttttaaactttttacag
|||||| || | ||| ||| |||||||||||||||| ||  | |||||||| |||||||| || ||||||||| | ||||| ||||| ||  |||| ||||| ||| || |||   |||  |   |   |      |   ||   |  || |||  | |    | ||| |||  || |    |  | | | || |  ||   ||  | | | |   | || |||||   ||   |  | ||| | |   ||   || ||   |            
CAAAACTAAAGATGGCCAAAAACTTAAAGCATATGCTCCCTTCACAATTGTTTGTGATGGCTGTTTCTCAAATCTACGTCGGTCTCTCTGCTACCCCAAGgttgaactgttctaaataagttgagttgcaaaaatatcatttttcttttttaatgatatcaattcaaa-gacagtttgccgaaactgcaaaatct--atagaattttgtcagttgtgtac-cagtttgcttgacttgcctgatatattattgaacacttgccag-----------

upper sequence: Vv00s0525g00020.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: PP1S300_38V6.1 (Physcomitrella patens), 5'ss of exon 4
CAAAACGAAGGCTGGTCAAGAACTTAAAGCATATGCACCACTTACAATTGTGTGTGATGGTTGCTTCTCAAATTTGCGTCGCTCTCTTTGTAACCCTAAGgtgaagtgctctcttaaccttcttaatactttccttggttggttacttaaatattcttttgtgaaatgaccattggtgatacttt--ctacattttcatctcatcctctgaatctggcacacagttcaattttttcccatgaaacaaacttattcattttttaaactttttacag
|  |||    | ||||||||| |   | ||  | || ||||||||| | || || |||||||||||||||||||||||||||   |||||| | || |||||   || |  | || |     | |||  ||| ||   | | | |||         |||||   ||| || ||||||   ||||    | |  | |      |    ||  | |    | |    ||||||| |     |    ||                             
CCGAACACCTGATGGTCAAGAGCAGGAGGCCAAGGCTCCACTTACATTCGTCTGCGATGGTTGCTTCTCAAATTTGCGTCGCAAGCTTTGTGAGCCGAAGgtcccgtccctttttca-----tgaatcatttactccatagatcactctgtgtgagttttgacgaat-actattggtacaacttaagttgctctatggcgctacttccttgaccaacaatatg--tcaatttctcttgtttgtgcag----------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33406097|gb|CF211724.1|CF211724
EST:     TGTGTGATGGTTGCTTCTCAAGTTTGCGTCGCTCTCTTTGTAACCCTAAG                         GTAGATGTGCCCTCCT
genomic: TGTGTGATGGTTGCTTCTCAAATTTGCGTCGCTCTCTTTGTAACCCTAAGgtgaagtgct ... ctttttacagGTAGATGTGCCCTCCT
EST: gi|110357257|gb|EC920671.1|EC920671
EST:     TGTGTGATGGTTGCTTCTCAAATTTGCGTCGCTCTCTTTGTAACCCTAAG                         GTAGATGTGCCCTCCTGTTTTGTTGGTTTGGTCCTGGAGAACTGTCAGCTT
genomic: TGTGTGATGGTTGCTTCTCAAATTTGCGTCGCTCTCTTTGTAACCCTAAGgtgaagtgct ... ctttttacagGTAGATGTGCCCTCCTGTTTTGTTGGTTTGGTCCTGGAGAACTGTCAGCTT