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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATCTCAGCTTCATACCTTTCAGAAAGCCCCGGCACTAGTAATTCTTCTCCAAACTTGCCAACTTCTGATATAAATGAgtaagattgaacttccatccattcttcagaacttttgtaacacctgtttaggtatcataatcgatttataaagtttgaagttactaaattcttcaagggaatgaatttcatgtttag

Basic information

species Vitis vinifera
transcript Vv00s0475g00030.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0475g00030.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA15G12930.2 (Glycine max), 5'ss of exon 5
GAATCTCAGCTTCATACCTTTCAGAAAGCCCCGGCACTAGTAATTCTTCTCCAAACTTGCCAACTTCTGATATAAATGAgtaagattgaacttccatccattcttcagaacttttgtaacacctgtttaggtatcataatcgatttataaagtttgaagttactaaattcttcaagggaatgaatttcatgtttag
          |||||| |||| ||||||||| ||| ||  ||| || |||||||| ||||||||||| |||| |||||||||||| |   | |  || |||     |  | |||| |  |  |||  | | | ||  ||| |||||           | |||| |||||     || || | ||||| |||  |||
---------GTTCATATCTTTTAGAAAGCCCTGGCGCTGATAACTCATCTCCAAAGTTGCCAACTTCAGATACAAATGAgtaagaatttgcattaattcataaaaaaagattttttt--cttctggct-gatgtctcaatggatttg----------aattaccaaattgagtgagtgatt-aattttatgcctag

upper sequence: Vv00s0475g00030.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA09G02030.1 (Glycine max), 5'ss of exon 4
GAATCTCAGCTTCATACCTTTCAGAAAGCCCCGGCACTAGTAATTCTTCTCCAAACTTGCCAACTTCTGATATAAATGAgtaagattgaacttccatccattcttcagaacttttgtaacacctgtttaggtatcataatcgatttataaagtttgaagttactaaattcttcaagggaatgaatttcatgtttag
          |||||| |||| ||||||||| ||  ||  |||  |||||||||| ||||||||| |||||| |||||||||||| |   | |  || |||     |  | |||  |  |  |||   || | ||  ||| |||||           | |||| |||||     || || | ||||| |||  |||
---------GTTCATATCTTTTAGAAAGCCCTGGTGCTGATAACACTTCTCCAAAGTTGCCAACTCCTGATACAAATGAgtaagaatttgcattaattcataaaaaaagaatttctt--cttctggc-agatgtctcaatggatttg----------aattaccaaattgagtgagtgatt-aattttatgcctag