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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAACGAAGGCTGGTCAAGAACTTAAAGCATATGCGCCACTTACAATTGTGTGTGATGGTTGCTTCTCAAATTTGCGTCGCTCACTTTGTAACCCTAAGgtgaagtgctctcttaaccttcttaatactctccttggttggttacttaaatattcttttgtgaaatgaccattggtgatactttctgcattttcatctcatcctctgaatctggcacacagttcaattttttcccatgaaacaaacttattcattttttaaactttttacag

Basic information

species Vitis vinifera
transcript Vv00s0441g00020.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0441g00020.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: PP1S300_38V6.1 (Physcomitrella patens), 5'ss of exon 4
CAAAACGAAGGCTGGTCAAGAACTTAAAGCATATGCGCCACTTACAATTGTGTGTGATGGTTGCTTCTCAAATTTGCGTCGCTCACTTTGTAACCCTAAGgtgaagtgctctcttaaccttcttaatactctccttggttggttacttaaatattcttttgtgaaatgaccattggtgatacttt--ctgcattttcatctcatcctctgaatctggcacacagttcaattttttcccatgaaacaaacttattcattttttaaactttttacag
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CCGAACACCTGATGGTCAAGAGCAGGAGGCCAAGGCTCCACTTACATTCGTCTGCGATGGTTGCTTCTCAAATTTGCGTCGCAAGCTTTGTGAGCCGAAGgtcccgtccctttttca-----tgaatcatttactccatagatcactctgtgtgagttttgacgaat-actattggtacaacttaagttgctctatggcgctacttccttgaccaacaatatg--tcaatttctcttgtttgtgcag----------------------------