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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCAATGGTGCCTTGGTTCGGGTTCTCATCCACACTAATGTTACCAAATACCTGAATTTCAAGGCTGTGGATGGTAGTTTTGTGTACAACAAAGGGAAGgtgtgaaccttagtaacttttgtacggagtatttgtttatcgcattgatatatatcatgcgcttctaactgcgtttcataatcaatcactgtttccag

Basic information

species Vitis vinifera
transcript Vv00s0313g00050.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0313g00050.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os03g16900.1 (Oryza sativa), 5'ss of exon 4
GGCCAATGGTGCCTTGGTTCGGGTTCTCATCCACACTAATGTTACCAAATACCTGAATTTCAAGGCTGTGGATGGTAGTTTTGTGTACAACAAAGGGAAGgtgtgaaccttagtaacttttgtacggagtatttgtttatcgcattgatatatatcatgcgcttctaa-ctgcgtttcataatcaatcactgtttccag
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GGCCAACGGTGCACTGGTCCGTGTACTCATCCACACGAGTGTGACAAAGTATCTGAATTTCAAGGCTGTCGACGGCAGCTTCGTGTACAACAATGGCAAGgtgtggatctgat--attcatatgttatgcaactgtcaa--acattggtgcattttctgaattactgagtcacctttatttgtttggcgataccgacag