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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGATCATTTTAGTTGGCGTTATGCATTCTGGGGGGAAGCAATTTTGATGCTTCCATTTGCTATACTAGGTTTTATTATGAAACCTTTGCAGTTAAAAGgtgcatattagttatgcattgatttgtgtgatccttctagcttttccagctatttctcaacaatttatggacacag

Basic information

species Vitis vinifera
transcript Vv00s0282g00040.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0282g00040.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA07G30370.1 (Glycine max), 5'ss of exon 7
GGAGATCATTTTAGTTGGCGTTATGCATTCTGGGGGGAAGCAATTTTGATGCTTCCATTTGCTATACTAGGTTTTATTATGAAACCTTTGCAGTTAAAAGgtgcatattagtta--tgcattgattt-gtgtgatccttctagcttttccagctatttctcaacaatttatggacacag
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GGAAATCATTTTGGTTGGCGTTATGGATTTTGGGTGGAAGCTATATTGATGTCTCCATTTGCTATTTTGGGATTTGTTATGAAGCCTTTGCAGTTAAAAGgtgcacattcttctcctgcattgattttgtgtagctccatta-ctttgtttcccatcactaaactatttgtgcatccag