Sequence
atgc intronic sequence ATGC exonic sequenceCTGTTTGAGATGGGTTTAGAGCTTTCACTTGCACGTCTACAGGCTCTTGCAAAATTTGCTTTTGGCATGGGATTGACTCAGgtaagatgttgataaaaataaagttaaaattgttcattgagtcagtaggtgtgcagatatgtggccaataattatatgatatattcatctttcaacattt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0282g00020.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA07G30360.2 (Glycine max), 5'ss of exon 5
CTGTTTGAGATGGGTTTAGAGCTTTCACTTGCACGTCTACAGGCTCTTGCAAAATTTGCTTTTGGCATGGGATTGACTCAGgtaagatgttgataaaaataaagttaaaattgttcattgagtcagtaggtgtgcagatatgtggccaataattatatgatatattcatctttcaacattt---
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CTGTTTGAGATGGGTTTAGAGCTTTCACTTGCACGTCTGAAAGCTCTTGCAAAATATGCTTTTGGGATGGGATTGGCTCAGgtatgatgt-gataatgggcatgcaaagaaaatttcttaagtcatttctttcacat-tattcatcatttagcttcatc-tatgttaaagattttaaatttatc
upper sequence: Vv00s0282g00020.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA08G06890.1 (Glycine max), 5'ss of exon 4
CTGTTTGAGATGGGTTTAGAGCTTTCACTTGCACGTCTACAGGCTCTTGCAAAATTTGCTTTTGGCATGGGATTGACTCAGgtaagatgttgataaaaataaagttaaaattgttcattgagtcagtaggtgtgcagatatgtggccaataattatatgatatattcatct---ttcaacattt-
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CTGTTTGAGATGGGTTTAGAGCTTTCACTTGCTCGTCTGAAAGCTCTTGCAAAATATGCTTTTGGGATGGGATTGACTCAGgtatgacacttt---gggtgtgataatggttgtgcaaagaaa-atttcttaggccatttcattcattttattcattggttagcttcatctatgctaaagattat
upper sequence: Vv00s0282g00020.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT4G04850.2 (Arabidopsis thaliana), 5'ss of exon 4
CTGTTTGAGATGGGTTTAGAGCTTTCACTTGCACGTCTACAGGCTCTTGCAAAATTTGCTTTTGGCATGGGATTGACTCAGgtaagatgttgataaaaataaagttaaaattgttcattgagtcagtaggtgtgcagatatgtggccaat--aattatatgatatattcatctttcaacattt-
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CTCTTTGAGATGGGTCTCGAGCTTTCACTTGCTCGTCTGAAAGCTCTTGCAAAATTTGCTTTTGGCATGGGACTAACTCAGgtttggttctaa--aagatgtttcttggtttgctt-taaactccttacattccttcttatattttcacttctgtcagataagcatctcaagagtcatcagtgaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161706912|gb|FC056800.1|FC056800EST: CACGTCTACAGGCTCTTGCAAAATTTGCTTTTGGCATGGGATTGACTCAG GTTGTGTTATCTACACTTGCGTTCACAGCATTTGAACTTCCACCTAATGGG
genomic: CACGTCTACAGGCTCTTGCAAAATTTGCTTTTGGCATGGGATTGACTCAGgtaagatgtt ... actctcgaagGTTGTGTTATCTACACTTGCGTTCACAGCATTTGAACTTCCACCTAATGGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTGTTTGAGATGGGTTTAGAGCTTTCACTTGCACGTCTACAGGCTCTTGCAAAATTTGCTTTTGGCATGGGATTGACTCAGgtaagatgttgataaaaataaagttaaaattgttcattgagtcagtaggtgtgcagatatgtggccaataattatatgatatattcatctttcaacattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaataa