Sequence
atgc intronic sequence ATGC exonic sequenceATAACCGATGCTGTAGTAGTTGCTCGGATTCTTAATGCTACATTAGTTGTACCAGAGTTGGATCATCATTCCTTCTGGAAAGATGATAGgtgagttgagattctatcaacttagtcatagtgacatttaacttggttgcaataatgagaattaaccatatgatcattctctcacttgagttctgttatttacgatgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0229g00100.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G101181_T03 (Zea mays), 5'ss of exon 4
ATAACCGATGCTGTAGTAGTTGCTCGGATTCTTAATGCTACATTAGTTGTACCAGAGTTGGATCATCATTCCTTCTGGAAAGATGATAGgtgagttgagattctatcaacttagtcatagtgacat-ttaacttggttgcaataatgagaattaaccatatgatcattctctcacttgagttctgttatttacgatgcag
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ATAACAGATGCTGTTGTAGTTGCCTGGATTTTGAATGCCACACTTGTTGTACCTGAGTTAGACCACCACTCGTTCTGGAAAGACGACAGgtgaattgagaa-ctagaattctagaaattacaggacgtttgctgaatgttactgttccaaaatggcttgacttcaaatttcgtatgcag---------------------
upper sequence: Vv00s0229g00100.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G101181_T01 (Zea mays), 5'ss of exon 4
-------ATAACCGATGCTGTAGTAGTTGCTCGGATTCTTAATGCTACATTAGTTGTACCAGAGTTGGATCATCATTCCTTCTGGAAAGATGATAGgtgagttgagattctatcaacttagtcatagtgacat-ttaacttggttgcaataatgagaattaaccatatgatcattctctcacttgagttctgttatttacgatgcag
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CTTGCAGATAACAGATGCTGTTGTAGTTGCCTGGATTTTGAATGCCACACTTGTTGTACCTGAGTTAGACCACCACTCGTTCTGGAAAGACGACAGgtgaattgagaa-ctagaattctagaaattacaggacgtttgctgaatgttactgttccaaaatggcttgacttcaaatttcgtatgcag---------------------
upper sequence: Vv00s0229g00100.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA17G15170.1 (Glycine max), 5'ss of exon 4
ATAACCGATGCTGTAGTAGTTGCTCGGATTCTTAATGCTACATTAGTTGTACCAGAGTTGGATCATCATTCCTTCTGGAAAGATGATAGgtgagttgagattctatcaacttagtcatagtgacatttaacttggttgcaataatgagaattaaccatatgatcattctctcacttgagttctgttatttacgatgcag
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ATAACAGATGCAGTTGTTGTTGCAAGAATTCTTAATGCTACATTAGTTGTACCTGAGTTGGATCATCAATCTTTTTGGAAAGATGACAGgtatctgcagatcctatca-ttcattcat---------tattctgattagagctaacaaaactaagttaataatttttctttga--tgacattt-ttgtttg-aatgcag
upper sequence: Vv00s0229g00100.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA05G04720.1 (Glycine max), 5'ss of exon 4
ATAACCGATGCTGTAGTAGTTGCTCGGATTCTTAATGCTACATTAGTTGTACCAGAGTTGGATCATCATTCCTTCTGGAAAGATGATAGgtgagttgagattctatcaacttagtcat-agtgacatttaacttggttgcaataa--tgagaattaaccatatgatcattctctcacttgagttctgttatttacgatgcag
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ATAACAGATGCAGTTGTTGTTGCAAGAATTCTTAATGCTACACTAGTTGTACCTGAGTTGGATCATCAATCTTTTTGGAAAGATGACAGgtatctgcagatcctatca-ttcattcattattctgattagaactaacaacaccaagttaacaatttttcttttgatgacatttttgtttgaatgcag---------------
upper sequence: Vv00s0229g00100.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA01G41740.1 (Glycine max), 5'ss of exon 4
ATAACCGATGCTGTAGTAGTTGCTCGGATTCTTAATGCTACATTAGTTGTACCAGAGTTGGATCATCATTCCTTCTGGAAAGATGATAGgtgagttgagattctatcaacttagtcatagtgacatttaacttggttgcaataatgagaattaaccatatgatcattctctcacttgagttctgttatttacgatgcag
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ATAACAGATGCTGTTGTTGTTGCACGAATTCTTAATGCCACACTAGTAGTACCTGAGTTGGATCATCATTCTTATTGGAAAGATGACAGgtaatttgcagttcctttcactcattcaccatgagactcaagtttgttg----------gttcatttaaatgaaggcatttttgtttgaatacag---------------
upper sequence: Vv00s0229g00100.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA11G03640.1 (Glycine max), 5'ss of exon 5
ATAACCGATGCTGTAGTAGTTGCTCGGATTCTTAATGCTACATTAGTTGTACCAGAGTTGGATCATCATTCCTTCTGGAAAGATGATAGgtgagttgagattctatcaacttagtcatagtgacatttaacttggttgcaataatgagaattaaccatatgatcattctctcacttgagttctgttatttacgatgcag
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ATAACAGATGCTGTTGTTGTTGCCCGAATTCTTAATGCCACACTAGTAGTACCGGAGTTGGATCATCATTCTTATTGGAAGGATGACAGgtaatttgcagttcctttgacgcattcaccatgagaatcaagtttgttggttcatttaataaaaggcat----------ttttgtttgaatacag---------------
upper sequence: Vv00s0229g00100.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT4G16650.1 (Arabidopsis thaliana), 5'ss of exon 4
ATAACCGATGCTGTAGTAGTTGCTCGGATTCTTAATGCTACATTAGTTGTACCAGAGTTGGATCATCATTCCTTCTGGAAAGATGATAGgtgagttgag---attctatcaa---------cttagtcatagtgacattta---acttggttgcaataatgagaattaaccatatgatcattctctcacttga---gttctgttatttacgatgcag
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ATAACTGATGCAGTGGTTGTTGCACGGATTCTTAATGCTACTTTAGTTGTACCCGAGTTGGATCACCATTCTTACTGGAAAGATGACAGgtaactttagcaagttttggcaagtgaccatcttcagttgccgtatcaattacttactgaaatgtatcatctaaatctgtttgtaacgcaaaacatttactgaaaaggttactttgttcgctgtgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161706756|gb|FC056366.1|FC056366EST: ACATTAGTTGTACCAGAGTTGGATCATCATTCCTTCTGGAAAGATGATAG TGACTTTGTCAACATTTTTGATGTTGATTGGTTCATTTCTTCCCTTGCAAA
genomic: ACATTAGTTGTACCAGAGTTGGATCATCATTCCTTCTGGAAAGATGATAGgtgagttgag ... tacgatgcagTGACTTTGTCAACATTTTTGATGTTGATTGGTTCATTTCTTCCCTTGCAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATAACCGATGCTGTAGTAGTTGCTCGGATTCTTAATGCTACATTAGTTGTACCAGAGTTGGATCATCATTCCTTCTGGAAAGATGATAGgtgagttgagattctatcaacttagtcatagtgacatttaacttggttgcaataatgagaattaaccatatgatcattctctcacttgagttctgttatttacgatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG