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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGTTTAGGAACCAAAGTCAATGATGAAGGCATTGCTTACTACAACAATCTCATTAATGCTCTTCTTGACAAGGgtatgaagtttttatatttgatttccctctacatgcaacaggttacttattcagaaactttgctcctgcag

Basic information

species Vitis vinifera
transcript Vv00s0220g00070.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0220g00070.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT5G36890.1 (Arabidopsis thaliana), 5'ss of exon 5
ATGGTTTAGGAACCAAAGTCAATGATGAAGGCATTGCTTACTACAACAATCTCATTAATGCTCTTCTTGACAAGGgtatgaagttt--ttatatttga--tttccctctacatgcaacaggttacttattcagaaactttgctcctgcag
||||  | |||||  |||||||||| ||||||||||||| ||||||| |||| |||||| | |||||||| || |||||  | | |  ||  | |     ||| ||||| | |      ||| ||||   | | |   ||||| ||||||
ATGGCCTGGGAACTGAAGTCAATGAAGAAGGCATTGCTTTCTACAACGATCTTATTAATACACTTCTTGAAAAAGgtatttactctaattgaaatgagctttttcctcttcgtatggatggt-actttgacgggatgattgctactgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161714337|gb|FC062638.1|FC062638
EST:     TGAAGGCATTGCTTACTACAACAATCTCATTAATGCTCTTCTTGACAAGG                         GTATTGAGCCTTATGTAACTTTATACCACTGGGATCTCCCTCTATATCTTC
genomic: TGAAGGCATTGCTTACTACAACAATCTCATTAATGCTCTTCTTGACAAGGgtatgaagtt ... gctcctgcagGTATTGAGCCTTATGTAACTTTATACCACTGGGATCTCCCTCTATATCTTC
EST: gi|352787008|gb|FQ476041.1|FQ476041
EST:     TGAAGGCATTGCTTACTACAACAATCTCATTAATGCTCTTCTTGACAAGG                         GTATTGAGCCTTATGTAACTTTATACCACTGGGATCTCCCTCTATATCTTC
genomic: TGAAGGCATTGCTTACTACAACAATCTCATTAATGCTCTTCTTGACAAGGgtatgaagtt ... gctcctgcagGTATTGAGCCTTATGTAACTTTATACCACTGGGATCTCCCTCTATATCTTC
EST: gi|352795190|gb|FQ477300.1|FQ477300
EST:     TGAAGGCATTGCTTACTACAACAATCTCATTAATGCTCTTCTTGACAAGG                         GTATTGAGCCTTATGTAACTTTATACCACTGGGATCTCCCTCTATATCTTC
genomic: TGAAGGCATTGCTTACTACAACAATCTCATTAATGCTCTTCTTGACAAGGgtatgaagtt ... gctcctgcagGTATTGAGCCTTATGTAACTTTATACCACTGGGATCTCCCTCTATATCTTC
EST: gi|352785574|gb|FQ475577.1|FQ475577
EST:     TGAAGGCATTGCTTACTACAACAATCTCATTAATGCTCTTCTTGACAAGG                         GTATTGAGCCTTATGTAACTTTATACCACTGGGATCTCCCTCTATATCTTC
genomic: TGAAGGCATTGCTTACTACAACAATCTCATTAATGCTCTTCTTGACAAGGgtatgaagtt ... gctcctgcagGTATTGAGCCTTATGTAACTTTATACCACTGGGATCTCCCTCTATATCTTC