Sequence
atgc intronic sequence ATGC exonic sequenceGGACCAGAAAACTCTGGAAAGGCTTCGGGCTGAAAGGCAAGCAAAGATTGATGAGCTTAAGGAAAAGACAAATTACTATATTACTCAACAGCTCATTCAGgtgataatcggaagttaactatattttcaaattctttttccttcttcaatatcactataaatctctattttcattttttttttttttgaaagaagttaat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0215g00090.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA04G07860.1 (Glycine max), 5'ss of exon 4
GGACCAGAAAACTCTGGAAAGGCTTCGGGCTGAAAGGCAAGCAAAGATTGATGAGCTTAAGGAAAAGACAAATTACTATATTACTCAACAGCTCATTCAGgtgataatcggaagttaactatattttcaaattctt--tttccttcttcaatatcactataaatctctattttcattttttttttttttgaaagaagttaat
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GGATCAGAAAATTCTTGAAAGGCTTCGAGCTGAAAGGCAAGAAAAAATTGATGAGCTCAAAGAAAGGACAAATTATTACACTACACAACAGCTCATTCAGgtgattgtttgaggcaaggcttgttacatggttttcaatatcaccattctttcatttcatggcgtttggagtggacaaaataactttggggttgtagtct--
upper sequence: Vv00s0215g00090.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA06G07930.1 (Glycine max), 5'ss of exon 4
GGACCAGAAAACTCTGGAAAGGCTTCGGGCTGAAAGGCAAGCAAAGATTGATGAGCTTAAGGAAAAGACAAATTACTATATTACTCAACAGCTCATTCAGgtgataatcggaagttaa-----ctata---ttttcaaattctttttccttcttcaatatcactataaatctctattttcattttttttttttttgaaagaagttaat
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GGATAAGAAAATTCTTGAAAGGCTTCGAGCTGAAAGGCAAGAAAAAATTGATGAGCTCAAAGAAAGGACAAATTATTACACTACACAACAGCTCATTCAGgtgattgtttgaagcaaggcttgttacatggttttcaatatcaccatctttcatttctggtgtt-tggagtggaacttcggggttgtagtctgctggggtt-------
upper sequence: Vv00s0215g00090.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA14G17080.1 (Glycine max), 5'ss of exon 3
GGACCAGAAAACTCTGGAAAGGCTTCGGGCTGAAAGGCAAGCAAAGATTGATGAGCTTAAGGAAAAGACAAATTACTATATTACTCAACAGCTCATTCAGgtgataatcggaagttaactatattttcaaattctttttccttcttcaatatcactataaatctctattttcattttttttttttttgaaagaagttaat-
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GGACCAGAAAATTCTTGAAAGTCTTAGAGCTGAAAGGAAGGCAAAAATTGATGAGCTCAAAGAGAAGACAAATTATTACATTACTCAACAACTCATTCAGgtaattgtttaaagtgagtattgttacaagactttcaatatcaccttcgt-tccttctcatttagagcagacaaaatatacttgggttgtattgatcagtt
upper sequence: Vv00s0215g00090.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA17G29620.1 (Glycine max), 5'ss of exon 3
GGACCAGAAAACTCTGGAAAGGCTTCGGGCTGAAAGGCAAGCAAAGATTGATGAGCTTAAGGAAAAGACAAATTACTATATTACTCAACAGCTCATTCAGgtgataatcggaagttaactatattttcaaattctttttcc-ttcttcaatatcactataaatctctattttcattttttttttttttgaaagaagttaat
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GGACCAGAAAATTCTTGAAAGTCTTAGAGCTGAAAGGAAGGCAAAAATTGATGAGCTCAAAGAGAAGACAAATTATTACATTACTCAACAACTCATTCAGgtcagtgacagat-ctagaaatgtttggtagtgggggcaatattgatgcataaatttatagcattaaaaatataaaacaacattgttaaagtatagatcat
upper sequence: Vv00s0215g00090.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA11G18060.1 (Glycine max), 5'ss of exon 3
GGACCAGAAAACTCTGGAAAGGCTTCGGGCTGAAAGGCAAGCAAAGATTGATGAGCTTAAGGAAAAGACAAATTACTATATTACTCAACAGCTCATTCAGgtgataatcggaagttaactatattttcaaattctttttcc-ttcttcaatatcactataaatctctattttcattttttttttttttgaaagaagttaat
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GGACCAGAAAATTCTTGAAAGTCTTAGAGCTGAAAGGAAGGCAAAAATTGATGAGCTCAAAGAGAAGACAAATTATTACATTACTCAACAACTCATTCAGgtcagtgacagat-ctagaaatgtttggtagtgggggcaatattgatacataaatttatagcattaaaaatataaaacaacattgttaaagtatagatcatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110411503|gb|EC977220.1|EC977220EST: AAGACAAATTACTATATTACTCAACAGCTCATTCAG AGATATGACCCTGCCCCAGCAGCAAAGGCAGCTGCAGCGACTGTCCTGGCA
genomic: AAGACAAATTACTATATTACTCAACAGCTCATTCAGgtgataatcg ... tttaatgcagAGATATGACCCTGACCCAGCAGCAAAGGCAGCTGCAGCGACTGTCCTGGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGACCAGAAAACTCTGGAAAGGCTTCGGGCTGAAAGGCAAGCAAAGATTGATGAGCTTAAGGAAAAGACAAATTACTATATTACTCAACAGCTCATTCAGgtgataatcggaagttaactatattttcaaattctttttccttcttcaatatcactataaatctctattttcattttttttttttttgaaagaagttaat
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccttcttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaagaa