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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTCTATGTTTGGTTCTTGCAACCCAGGGACAAAgttgaaggactttcttggccacaatgcggtctagccctcacctccaaatctgaggatgcaaaagcttcgccatgaggtggagggagtatgcaaagcaattcccaacaattggatttgagaaagaaaccatgaag

Basic information

species Vitis vinifera
transcript Vv00s0211g00080.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0211g00080.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os03g52840.3 (Oryza sativa), 5'ss of exon 12
-----------------------------GTTTCTATGTTTGGTTCTT-----GCAACCC--AGGGACAA-Agttgaaggactttcttggccacaatgcggtctagccctcacctccaaatctgaggatgcaaaagcttcgccatgaggtggagggagtatgcaaagcaattcccaacaattggatttgagaaagaaaccatgaag--
                              |  | |   |||| | |      | ||||   | | |||| |  | |   |||||    |  |||    ||| | | ||| ||    ||||     |   | |    ||        | || | | |||||       | || || |    | |  |      |  |||||||     
GCCATGATGTGGAGGAATATGCAAAACAGTTCCCCACAATTGGGTTTGAGAAAGAAACCATGAAGTACAAGAACTAAGAAACTTTGAATGGAACAGCAAGgtattgtcctgacagataaatt----ggctccatttttttttagcatgctgcatgcagtatat----tagttgcctaggccttggctccgatcatgaaccatgtttac

upper sequence: Vv00s0211g00080.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G135283_T04 (Zea mays), 5'ss of exon 15
--------GTTTCTATGTTT-GGTTCTTGCAACCCAGGGACAAAgttgaaggactttcttggccacaatgcggt-ctagccctcacctccaaat--ctgaggatgcaaaagcttcgccatgaggtggagggagtatgcaaagcaattcccaacaattggatttgagaaagaaaccatgaag------------------------------------------------------
        |     ||||   ||   ||||||  ||    | ||      |   |      |  || |||   | | ||  || |  ||   ||  |   | ||||   | ||| ||     |||  ||  | ||||||    |||   ||  |  |   ||    || |       | ||                                                      
AAAGCTTCGCCATGATGTAGAGGAATTTGCAAAACAATTCCCAACAATTGGATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctctatctttgc---acggtttagtcattatgcattctaatatacagtagctcagttgtgaaagggggtaccggagctggaactgccgttttcttacttggctgagcgcttccctcttatccatttgcag

upper sequence: Vv00s0211g00080.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G135283_T03 (Zea mays), 5'ss of exon 15
--------GTTTCTATGTTT-GGTTCTTGCAACCCAGGGACAAAgttgaaggactttcttggccacaatgcggt-ctagccctcacctccaaat--ctgaggatgcaaaagcttcgccatgaggtggagggagtatgcaaagcaattcccaacaattggatttgagaaagaaaccatgaag---------------------------------------------------------
        |     ||||   ||   ||||||  ||    | ||      |   |      |  || |||   | | ||  || |  ||   ||  |   | ||||   | ||| ||     |||  ||  | ||||||    |||   ||  |  |   ||    || |       | ||                                                         
AAAGCTTCGCCATGATGTAGAGGAATTTGCAAAACAATTCCCAACAATTGGATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctctatctttgc---acggtttagtcattatgcattctaatatacagtagctcagttgtgaaagggggtaccggagctggaactgccgttttcttacttggctgagcgcttccctcttatccatttgcagaag

upper sequence: Vv00s0211g00080.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA08G37270.1 (Glycine max), 5'ss of exon 15
--------------------------------------------GTTTCTATGTTTGGTTCTTGCAACCCAGGGACAAAgttgaaggactttcttggccacaatgcg--gtctagccctcacctccaaatctgaggatgcaaaagcttcgccatgaggtggaggg-agtatgcaaagcaattcccaacaattggatttgagaaagaaaccatgaag
                                            ||||  ||        | || | | || | |   ||   |   | |||          |||||   |      ||||  | |  || ||   || |  |  | |   | |  |    |     ||   ||| |  ||   ||| |  | | || |                 
CCGCCTTGATGTTGAGGAGTATGCAAAACAATTTCCAACCATTGGTTTTGATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgttattctttactcattttctcatttgtttattcttattcattttcgtttgtcccatattggttgacaaggtcatagacaagaggtag-ttagcc---------------