Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgtttttctttttttacctctttatcaagtccaggctttctgagttgtttcatttatccatttgacaaaccttgagttttcttcagatggggcttta...

Basic information

species Vitis vinifera
transcript Vv00s0187g00220.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0187g00220.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA08G44410.1 (Glycine max), 5'ss of exon 5
ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgtttttctttttttacctctttatcaagtccaggctttctgagttgtttcatttatccatttgacaaaccttgagttttcttcagatggggcttta---
|||||||||||||||||||| ||||||||||| ||||||||||||||||||   |||||  |  ||  ||| ||| |    | |  | ||      || ||| | |     | |  |||| | || |  |  |||    |     | ||   
ACTCTTACTTTTGCTTGGGTGAACTTTTTCTTTTCTGGATTTGTAGCAGgta-attttttatacttcccctatttgtttcttacttgattggaatattattttagtg--tgaatccacaatctttaaaatgcctttgtttatatatatacat

upper sequence: Vv00s0187g00220.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA18G08370.1 (Glycine max), 5'ss of exon 2
-ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgtttttctttttttacctctttatcaagtccaggctttctgagttgtttcatttat-ccatttgacaaaccttgagttttcttcagatggggcttta-
 |||||||||||||||||||| ||||||||||| ||||||||||||||||||   |||||  |   |     |  |||    | |   ||   ||| |||    |||| |   | || |||  | |  |   ||||   | |      | | 
GACTCTTACTTTTGCTTGGGTGAACTTTTTCTTTTCTGGATTTGTAGCAggta-attttttataactacttcccctatttgtttcttactggttga-ttggaatatttgtgtgaattcacattcttcaaaacttctct-gtttatatatcat

upper sequence: Vv00s0187g00220.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT4G12590.1 (Arabidopsis thaliana), 5'ss of exon 4
ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgtttt-----------------------tctttttttacctctttatcaagtcca-----------ggctttctga---gttgtttcatt-tatccatttgacaaacct-tgagttttcttcagatggggcttta-------------------------------------------------
|| || |||||||| ||||| ||||| ||||||||||||||||| |||||| | |||                        | ||| ||     ||| || ||   ||           |  ||| | |   | ||||||| |   | ||| ||| |||||  | | || | | ||  ||   || ||                                                 
ACACTCACTTTTGCATGGGTCAACTTCTTCTTCTCTGGATTTGTTGCAGgtttatttcctaaacaaagtgttttgcaattatttttcttggttacttcataaacagcaatcatgtatttgattttataactggctgtttcactgctttcatctgagaaaccagttaattgtttcca--tgatactctaatttttttataattccatagcatctaaggcttctttgtttatcttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|77588076|gb|DV223250.1|DV223250
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|51051352|gb|CO819013.1|CO819013
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTGGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCTATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|77586760|gb|DV222522.1|DV222522
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|34321024|gb|CF373778.1|CF373778
EST:     TACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
genomic: TACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|28961834|gb|CB340921.1|CB340921
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|110726655|gb|EE102627.1|EE102627
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTGGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCTATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|110685864|gb|EE062959.1|EE062959
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|29783362|gb|CB349482.2|CB349482
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTCACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|77577964|gb|DV217740.1|DV217740
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|71881457|gb|DT030512.1|DT030512
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTGGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCTATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|110701548|gb|EE079248.1|EE079248
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTGGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCTATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|26257347|gb|CA808410.1|CA808410
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|110383463|gb|EC947838.1|EC947838
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|34542613|gb|CF510845.1|CF510845
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTGGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCTATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|110396217|gb|EC961898.1|EC961898
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|71873805|gb|DT022860.1|DT022860
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTGGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCTATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|110371370|gb|EC935343.1|EC935343
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTGGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCTATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|34549179|gb|CF517411.1|CF517411
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTGGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCTATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|71875866|gb|DT024921.1|DT024921
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|110701549|gb|EE079249.1|EE079249
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTGGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCTATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|27585127|gb|CB007822.1|CB007822
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGAAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|352790841|gb|FQ475478.1|FQ475478
EST:     TTCTCTGGATTTGTAGCAG                         CCAAG-TTCCTTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAAT
genomic: TTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACC-TTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAAT
EST: gi|71867954|gb|DT017009.1|DT017009
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|294964063|gb|GW837866.1|GW837866
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|77577299|gb|DV217363.1|DV217363
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|22009765|gb|BQ794799.1|BQ794799
EST:     ACTCTTACTTTTGCTTGGGNTAACTTTTTCTTCTCTGGATTTGTAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|352794704|gb|FQ475202.1|FQ475202
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|71873978|gb|DT023033.1|DT023033
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTGGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCTATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|71874611|gb|DT023666.1|DT023666
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|71875857|gb|DT024912.1|DT024912
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|110712770|gb|EE088107.1|EE088107
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTGGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCTATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|71868316|gb|DT017371.1|DT017371
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCT-TGGATTTGTGGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCTATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|34542700|gb|CF510932.1|CF510932
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTGGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCTATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|33406423|gb|CF212050.1|CF212050
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|26258038|gb|CA809101.1|CA809101
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTGGCAG                         CCAAGATACCTTTCCCCTTGACTCAGGGGTTTCGCTCTATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|110729230|gb|EE105337.1|EE105337
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTGGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCTATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|77584920|gb|DV221543.1|DV221543
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|352781978|gb|FQ469276.1|FQ469276
EST:     TACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTGGTAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
genomic: TACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|26258231|gb|CA809294.1|CA809294
EST:     CTTTTTCTTCTCTGGATTTGTAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCCTCCATGTTACAAAAT
genomic: CTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCG-CTCCATGTTACAAAAT
EST: gi|28961974|gb|CB341013.1|CB341013
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|110702874|gb|EE079227.1|EE079227
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTGGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCTATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|77582909|gb|DV220445.1|DV220445
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTGGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCTATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|32245682|gb|CD711501.1|CD711501
EST:     GATTTGTAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
genomic: GATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|33405791|gb|CF211418.1|CF211418
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTGGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCTATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|71869568|gb|DT018623.1|DT018623
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|110363258|gb|EC926834.1|EC926834
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|71856647|gb|DT005702.1|DT005702
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTGGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCTATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|349830208|gb|FQ420468.1|FQ420468
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|71875634|gb|DT024689.1|DT024689
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|26257452|gb|CA808515.1|CA808515
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|110381363|gb|EC946692.1|EC946692
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTGGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCTATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|26257101|gb|CA808164.1|CA808164
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTGGCAG                         CCAAGATACCTTTCCCCTTGACTCAGGGGTTTCGCTCTATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|110687779|gb|EE065579.1|EE065579
EST:     TTTCTTCTCTGGATTTGTGGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCTATGTTACAAAATG
genomic: TTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|26261832|gb|CA812895.1|CA812895
EST:     ACTCTTACTTTTCCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|351013193|gb|FQ424898.1|FQ424898
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|30124839|gb|CB910178.1|CB910178
EST:     ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
EST: gi|351016605|gb|FQ424032.1|FQ424032
EST:     ATTTTTACTTTCGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAG                         CCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG
genomic: ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgttttt ... ttttccccagCCAAGATACCTTTCCCCTTGACTCAGAGGTTTCGCTCCATGTTACAAAATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACTCTTACTTTTGCTTGGGTTAACTTTTTCTTCTCTGGATTTGTAGCAGgtctgtttttctttttttacctctttatcaagtccaggctttctgagttgtttcatttatccatttgacaaaccttgagttttcttcagatggggcttta

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gacaaac