1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' | 29 5' 3' | 30 5' 3' | 31 5' 3' | 32 5' 3' | 33 5' 3' | 34 5' 3' | 35 5' 3' | 36 5' 3' | 37 5' 3' | 38 5' 3' | 39 5' 3' |
AAAAGATATGATGGTGGAAGCTGAATTAGGAAGATTATCAGGAACTGAAGATGACTTGACCGTTGAAGATTATGAAGCAAAGCTGACTGATGTTGATCAGgtcactgctctttcaaataaatcaaaatcaacttactcttttctctttttaaaaatctcgatgtcatcatggttggccctgtgtgaattgcag
species | Vitis vinifera |
transcript | Vv17s0000g02140.t01 |
intron # | 37 |
splice site | 5' |
intron type | U2 |
EST: ATGACTTGACCGTTGAAGATTATGAAGCAAAGCTGACTGATGTTGATCAG GCTCTAGAGTTCATTGATGAAACTGGTATAGATGCTTTGGCAGTTTGTATCEST: gi|349824597|gb|FQ413264.1|FQ413264
genomic: ATGACTTGACCGTTGAAGATTATGAAGCAAAGCTGACTGATGTTGATCAGgtcactgctc ... tgaattgcagGCTCTAGAGTTCATTGATGAAACTGGTATAGATGCTTTGGCAGTTTGTATC
EST: ATGACTTGACCGTTGAAGATTATGAAGCAAAGCTGACTGATGTTGATCAG GCTCTAGAGTTCATTGATGAAACTGGTATAGATGCTTTGGEST: gi|71870716|gb|DT019771.1|DT019771
genomic: ATGACTTGACCGTTGAAGATTATGAAGCAAAGCTGACTGATGTTGATCAGgtcactgctc ... tgaattgcagGCTCTAGAGTTCATTGATGAAACTGGTATAGATGCTTTGG
EST: ATGACTTGACCGTTGAAGATTATGAAGCAAAGCTGACTGATGTTGATCAG GCTCTAGAGTTCATTGATGAAACTGGTATAGATGCTTTGGCAGTTTGTATCEST: gi|71890098|gb|DT039153.1|DT039153
genomic: ATGACTTGACCGTTGAAGATTATGAAGCAAAGCTGACTGATGTTGATCAGgtcactgctc ... tgaattgcagGCTCTAGAGTTCATTGATGAAACTGGTATAGATGCTTTGGCAGTTTGTATC
EST: ATGACTTGACCGTTGAAGATTATGAAGCAAAGCTGACTGATGTTGATCAG GCTCTAGAGTTCATTGATGAAACTGGTATEST: gi|349808649|gb|FQ405793.1|FQ405793
genomic: ATGACTTGACCGTTGAAGATTATGAAGCAAAGCTGACTGATGTTGATCAGgtcactgctc ... tgaattgcagGCTCTAGAGTTCATTGATGAAACTGGTAT
EST: ATGACTTGACCGTTGAAGATTATGAAGCAAAGCTGACTGATGTTGATCAG GCTCTAGAGTTCATTGATGAAACTGGTATAGATGCTTTGGCAGTTTGTATCEST: gi|30125587|gb|CB910926.1|CB910926
genomic: ATGACTTGACCGTTGAAGATTATGAAGCAAAGCTGACTGATGTTGATCAGgtcactgctc ... tgaattgcagGCTCTAGAGTTCATTGATGAAACTGGTATAGATGCTTTGGCAGTTTGTATC
EST: ATGACTTGACCGTTGAAGATTATGAAGCAAAGCTGACTGATGTTGATCAG GCTCTAGAGTTCATTGATGAAACTGGTATAGATGCTTTGGCAGTTTGTATCEST: gi|349826605|gb|FQ418696.1|FQ418696
genomic: ATGACTTGACCGTTGAAGATTATGAAGCAAAGCTGACTGATGTTGATCAGgtcactgctc ... tgaattgcagGCTCTAGAGTTCATTGATGAAACTGGTATAGATGCTTTGGCAGTTTGTATC
EST: ATGACTTGACCGTTGAAGATTATGAAGCAAAGCTGACTGATGTTGATCAG GCTCTAGAGTTCATTGATGAAACTGGTATAGATGCTTTGGCAGTTTGTATCEST: gi|349824745|gb|FQ414603.1|FQ414603
genomic: ATGACTTGACCGTTGAAGATTATGAAGCAAAGCTGACTGATGTTGATCAGgtcactgctc ... tgaattgcagGCTCTAGAGTTCATTGATGAAACTGGTATAGATGCTTTGGCAGTTTGTATC
EST: ATGACTTGACCGTTGAAGATTATGAAGCAAAGCTGACTGATGTTGATCAG GCTCTAGAGTTCATTGATGAAACTGGTATAGATGCTTTGGCAGTTTGTATCEST: gi|30130704|gb|CB916043.1|CB916043
genomic: ATGACTTGACCGTTGAAGATTATGAAGCAAAGCTGACTGATGTTGATCAGgtcactgctc ... tgaattgcagGCTCTAGAGTTCATTGATGAAACTGGTATAGATGCTTTGGCAGTTTGTATC
EST: ATGACTTGACCGTTGAAGATTATGAAGCNAAGCTGACTGATGTTGATCAG GCTCTAGAGTTCATTGATGAAACTEST: gi|349820676|gb|FQ408505.1|FQ408505
genomic: ATGACTTGACCGTTGAAGATTATGAAGCAAAGCTGACTGATGTTGATCAGgtcactgctc ... tgaattgcagGCTCTAGAGTTCATTGATGAAACT
EST: ATGACTTGACCGTTGAAGATTATGAAGCAAAGCTGACTGATGTTGATCAG GCTCTAGAGTTCATTGATGAAACTGGTATAGATGCTTTGGCAGTTTGTATCEST: gi|349808888|gb|FQ406738.1|FQ406738
genomic: ATGACTTGACCGTTGAAGATTATGAAGCAAAGCTGACTGATGTTGATCAGgtcactgctc ... tgaattgcagGCTCTAGAGTTCATTGATGAAACTGGTATAGATGCTTTGGCAGTTTGTATC
EST: ATGACTTGACCGTTGAAGATTATGAAGCAAAGCTGACTGATGTTGATCAG GCTCTAGAGTTCATTGATGAAACTGGTATAGATGCTTTGGCAGTTTGTATCEST: gi|27582127|gb|CB004822.1|CB004822
genomic: ATGACTTGACCGTTGAAGATTATGAAGCAAAGCTGACTGATGTTGATCAGgtcactgctc ... tgaattgcagGCTCTAGAGTTCATTGATGAAACTGGTATAGATGCTTTGGCAGTTTGTATC
EST: ATGACTTGACCGTTGAAGATTATGAAGCAAAGCTGACTGATGTTGATCAG GCTCTAGAGTTCATTGATGAAACTGGTATAGATGCTTTGGCAGTTTGTATC
genomic: ATGACTTGACCGTTGAAGATTATGAAGCAAAGCTGACTGATGTTGATCAGgtcactgctc ... tgaattgcagGCTCTAGAGTTCATTGATGAAACTGGTATAGATGCTTTGGCAGTTTGTATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAAGATATGATGGTGGAAGCTGAATTAGGAAGATTATCAGGAACTGAAGATGACTTGACCGTTGAAGATTATGAAGCAAAGCTGACTGATGTTGATCAGgtcactgctctttcaaataaatcaaaatcaacttactcttttctctttttaaaaatctcgatgtcatcatggttggccctgtgtgaattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA