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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAAGATGTGAGATTGCAGAGACTCTAGTGGAGAAGAATTTTGATTTGGCTTTCCGACTGATATATGAATTCAATCTTCCTGgtagccatagcattgtgaatttcttgtttgaagtatcatttgtttaatgtggtacattaggtttactttggtacaatataatttttcctttcttgttttttttttttttggcag

Basic information

species Vitis vinifera
transcript Vv04s0008g04520.t01
intron # 35
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g04520.t01 (Vitis vinifera), 5'ss of exon 35
lower sequence: GLYMA04G07760.1 (Glycine max), 5'ss of exon 5
GAGAAGATGTGAGATTGCAGAGACTCTAGTGGAGAAGAATTTTGATTTGGCTTTCCGACTGATATATGAATTCAATCTTCCTGgtagccatagcattgtgaatttcttgtttgaagtatcattt--gtttaatgtggtacattaggtttactttggtacaatataatttttcctttcttgttttttttttttttggcag
  |||| ||| | |||||||||  ||| || |||||||||||||||||||| |||| | |||| |||||||||||||||||||||| |      ||||  | |||| | |||  | | |  |||  | |  |    ||    |  |  ||||| | ||   | |  ||  |  | |||||                   
ACGAAGGTGTAAAATTGCAGAGGTTCTTGTTGAGAAGAATTTTGATTTGGCATTCCTATTGATCTATGAATTCAATCTTCCTGgtaac------attg--attttcctctttacaatctggttttagctccacaaagtgttgtcagcatacttagcta--gtttttttaattgtatcttgcag----------------

upper sequence: Vv04s0008g04520.t01 (Vitis vinifera), 5'ss of exon 35
lower sequence: GLYMA06G07850.2 (Glycine max), 5'ss of exon 34
GAGAAGATGTGAGATTGCAGAGACTCTAGTGGAGAAGAATTTTGATTTGGCTTTCCGACTGATATATGAATTCAATCTTCCTGgtagccatagcattgtgaatttcttgtttgaagtatcatttgtttaatgtggtacattaggtttactttggtacaatataatttttcctttcttgttttttttttttttggcag----
  |||| ||| | |||||||||  ||| || |||||||||||||||||||| |||| | |||| |||||||||||||||||||||| | ||       ||| |||| | |||  | | |  |||  ||    ||     |||| |  ||          | |     | | |  || |||||||| | || |  ||     
ACGAAGGTGTAAAATTGCAGAGGTTCTTGTTGAGAAGAATTTTGATTTGGCATTCCAATTGATCTATGAATTCAATCTTCCTGgtaac-at-------tgattttcctctttacaatctggttttgttgtcttgtgtttttagctccac---aaagtgttgtcggcatacttagctagtttttttgtattgtatcatgcag

upper sequence: Vv04s0008g04520.t01 (Vitis vinifera), 5'ss of exon 35
lower sequence: PP1S109_57V6.1 (Physcomitrella patens), 5'ss of exon 35
GAGAAGATGTGAGATTGCAGAGACTCTAGTGGAGAAGAATTTTGATTTGGCTTTCCGACTGATATATGAATTCAATCTTCCTGgtagccatagcattgtgaatttcttgtttgaagtatcatttgtttaatgtggtacattaggtttactttggtacaatataatttttcctttcttgttttttttttttttggcag
| | ||||||||  |||| ||||  || ||||| ||||||||||||||||| |||| | | ||||||||||| || ||| ||||||  || |  |    ||  |||  |||| |  |  |||||| |    | | |   |       |   || |  |  ||  | |||   || | ||  | |   || ||     
GCGGAGATGTGAAGTTGCTGAGAAGCTTGTGGAAAAGAATTTTGATTTGGCGTTCCAAATCATATATGAATTTAACCTTACTGgta--cagaa-acgacgatattcaagtttta--ttacatttgatggccg-gctgtttcgaacaga---tgttttagaatcgtgtttgtcttgtagtcatatccattgtt-----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349809889|gb|FQ398514.1|FQ398514
EST:     CCGACTGATATATGAATTCAATCTTCCTG                         CTGTTGATATATATGCTGGTGTTGCTGCATCACTTGCTGAGAGAAAAAAGG
genomic: CCGACTGATATATGAATTCAATCTTCCTGgtagccatag ... tttttggcagCTGTTGATATATATGCTGGTGTTGCTGCATCACTTGCTGAGAGAAAAAAGG
EST: gi|349807218|gb|FQ401210.1|FQ401210
EST:     CCGACTGATATATGAATTCAATCTTCCTG                         CTGTTGATATATATGCTGGTGTTGCTGCATCACTTGCTGAGAGAAAAAAGG
genomic: CCGACTGATATATGAATTCAATCTTCCTGgtagccatag ... tttttggcagCTGTTGATATATATGCTGGTGTTGCTGCATCACTTGCTGAGAGAAAAAAGG