1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' | 29 5' 3' | 30 5' 3' | 31 5' 3' | 32 5' 3' | 33 5' 3' | 34 5' 3' |
CAAAGAACTAAAGAAATGGGTGGACATCAAATCCTCTAAATATGGGACCCTCTGGGTGGTGCGTGAGAGACGCTGTGGCAGGCTCGGCACAGCACTGAAGgtattcttcttctatctcatgttctccattaccctcatctgtcagttgtcaacatgacattagaacaatgggaatcgtcagacttctttcagggttttca...
species | Vitis vinifera |
transcript | Vv16s0050g00490.t01 |
intron # | 33 |
splice site | 5' |
intron type | U2 |
EST: TCTGGGTGGTGCGTGAGAGACGCTGTGGCAGGCTCGGCACAGCACTGAAG GTACTAATAGACATGATTCAAGATAACGGAGAGCCTCCAAAGAAGAAGCTGEST: gi|349811562|gb|FQ409558.1|FQ409558
genomic: TCTGGGTGGTGCGTGAGAGACGCTGTGGCAGGCTCGGCACAGCACTGAAGgtattcttct ... tctggatcagGTACTAGTAGACATGATTCAAGATAACGGAGAGCCTCCAAAGAAGAAGCTG
EST: TCTGGGTGGTGCGTGAGAGACGCTGTGGCCGGCTCGGCACAGCACTGAAG GTACTAATAGACATEST: gi|351044162|gb|FQ452835.1|FQ452835
genomic: TCTGGGTGGTGCGTGAGAGACGCTGTGGCAGGCTCGGCACAGCACTGAAGgtattcttct ... tctggatcagGTACTAGTAGACAT
EST: TCTGGGTGGTGCGTGAGAGACGCTGTGGCAGGCTCGGCACAGCACTGAAG GTACTAATAGACGTGATTCAAGATAACGGAGAGCCTCCAAAGAAGAAGCTGEST: gi|110363895|gb|EC927525.1|EC927525
genomic: TCTGGGTGGTGCGTGAGAGACGCTGTGGCAGGCTCGGCACAGCACTGAAGgtattcttct ... tctggatcagGTACTAGTAGACATGATTCAAGATAACGGAGAGCCTCCAAAGAAGAAGCTG
EST: TCTGGGTGGTGCGTGAGAGACGCTGTGGCAGGCTCGGCACAGCACTGAAG GTACTAGTAGACATGATTCAAGATAACGGAGAGCCTCCAAAGAAGAAGCTGEST: gi|110358499|gb|EC922755.1|EC922755
genomic: TCTGGGTGGTGCGTGAGAGACGCTGTGGCAGGCTCGGCACAGCACTGAAGgtattcttct ... tctggatcagGTACTAGTAGACATGATTCAAGATAACGGAGAGCCTCCAAAGAAGAAGCTG
EST: TCTGGGTGGTGCGTGAGAGACGCTGTGGCAGGCTCGGCACAGCACTGAAG GTACTAGTAGACATGATTCAAGATAACGGAGAGCCTCCAAAGAAGAAGCTGEST: gi|110360244|gb|EC923096.1|EC923096
genomic: TCTGGGTGGTGCGTGAGAGACGCTGTGGCAGGCTCGGCACAGCACTGAAGgtattcttct ... tctggatcagGTACTAGTAGACATGATTCAAGATAACGGAGAGCCTCCAAAGAAGAAGCTG
EST: TCTGGGTGGTGCGTGAGAGACGCTGTGGCAGGCTCGGCACAGCACTGAAG GTACTAGTAGACATGATTCAAGATAACGGAGAGCCTCCAAAGAAGAAGCTGEST: gi|34363622|gb|CF405207.1|CF405207
genomic: TCTGGGTGGTGCGTGAGAGACGCTGTGGCAGGCTCGGCACAGCACTGAAGgtattcttct ... tctggatcagGTACTAGTAGACATGATTCAAGATAACGGAGAGCCTCCAAAGAAGAAGCTG
EST: TCTGGGTGGTGCGTGAGAGACGCTGTGGCAGGCTCGGCACAGCCCTGAAG GTACTAGTAGACATGATTCAAGATAACGGAGAGCCTCCAAAGAAGAAGCTGEST: gi|349824505|gb|FQ413172.1|FQ413172
genomic: TCTGGGTGGTGCGTGAGAGACGCTGTGGCAGGCTCGGCACAGCACTGAAGgtattcttct ... tctggatcagGTACTAGTAGACATGATTCAAGATAACGGAGAGCCTCCAAAGAAGAAGCTG
EST: TCTGGGTGGTGCGTGAGAGACGCTGTGGCAGGCTCGGCACAGCACTGAAG GTACTAATAGACATGATTCAAGATAACGGAGAGCCTCCAAAGAAGAAGCTGEST: gi|349824556|gb|FQ413223.1|FQ413223
genomic: TCTGGGTGGTGCGTGAGAGACGCTGTGGCAGGCTCGGCACAGCACTGAAGgtattcttct ... tctggatcagGTACTAGTAGACATGATTCAAGATAACGGAGAGCCTCCAAAGAAGAAGCTG
EST: TCTGGGTGGTGCGTGAGAGACGCTGTGGCAGGCTCGGCACAGCACTGAAG GTACTAATAGACATGATTCAAGATAACGGAGAGCCTCCAAAGAAGAAACTGEST: gi|349814862|gb|FQ410085.1|FQ410085
genomic: TCTGGGTGGTGCGTGAGAGACGCTGTGGCAGGCTCGGCACAGCACTGAAGgtattcttct ... tctggatcagGTACTAGTAGACATGATTCAAGATAACGGAGAGCCTCCAAAGAAGAAGCTG
EST: TCTGGGTGGTGCGTGAGAGACGCTGTGGCAGGCTCGGCACAGCACTGAAG GTACTAATAGACATGATTCAAGATAACGGACAGCCTCCCAAGAAGAAEST: gi|349813697|gb|FQ413931.1|FQ413931
genomic: TCTGGGTGGTGCGTGAGAGACGCTGTGGCAGGCTCGGCACAGCACTGAAGgtattcttct ... tctggatcagGTACTAGTAGACATGATTCAAGATAACGGAGAGCCTCCAAAGAAGAA
EST: TCTGGGTGGTGCGTGAGAGACGCTGTGGCAGGCTCGGCACAGCACTGAAG GTACTAATAGACATGATTCAAGATAACGGAGAGCCTCCAAAGAAGAAGCTGEST: gi|349811081|gb|FQ406069.1|FQ406069
genomic: TCTGGGTGGTGCGTGAGAGACGCTGTGGCAGGCTCGGCACAGCACTGAAGgtattcttct ... tctggatcagGTACTAGTAGACATGATTCAAGATAACGGAGAGCCTCCAAAGAAGAAGCTG
EST: TCTGGGTGGTGCGTGAGAGACGCTGTGGCAGGCTCGGCACAGCACTGAAG GTACTAATAGACATGATTCAAGATAACGGAGAGCCTCCAAAGAAGAAGCTGEST: gi|351045622|gb|FQ440807.1|FQ440807
genomic: TCTGGGTGGTGCGTGAGAGACGCTGTGGCAGGCTCGGCACAGCACTGAAGgtattcttct ... tctggatcagGTACTAGTAGACATGATTCAAGATAACGGAGAGCCTCCAAAGAAGAAGCTG
EST: TCTGGGTGGTGCGTGAGAGACGCTGTGGCAGGCTCGGCACAGCACTGAAG GTACTAGTAGACATGATTCAAGATAACGGAGAGCCTCCAAAGAAGAAGCTGEST: gi|349822506|gb|FQ412770.1|FQ412770
genomic: TCTGGGTGGTGCGTGAGAGACGCTGTGGCAGGCTCGGCACAGCACTGAAGgtattcttct ... tctggatcagGTACTAGTAGACATGATTCAAGATAACGGAGAGCCTCCAAAGAAGAAGCTG
EST: TCTGGGTGGTGCGTGAGAGACGCTGTGGCAGGCTCGGCACAGCACTGAAG GTACTAATAGACATGATTCAAGATAACGGAGAGCCTCCAAAGAAGAAGCTGEST: gi|349810172|gb|FQ401618.1|FQ401618
genomic: TCTGGGTGGTGCGTGAGAGACGCTGTGGCAGGCTCGGCACAGCACTGAAGgtattcttct ... tctggatcagGTACTAGTAGACATGATTCAAGATAACGGAGAGCCTCCAAAGAAGAAGCTG
EST: TCTGGGTGGTGCGTGAGAGACGCTGTGGCAGGCTCGGCACAGCACTGAAG GTACTAATAGACATGATTCAAGATAACGGAGAGCCTCCAAAGAAGAAGCTGEST: gi|349814599|gb|FQ399239.1|FQ399239
genomic: TCTGGGTGGTGCGTGAGAGACGCTGTGGCAGGCTCGGCACAGCACTGAAGgtattcttct ... tctggatcagGTACTAGTAGACATGATTCAAGATAACGGAGAGCCTCCAAAGAAGAAGCTG
EST: TCTGGGTGGTGCGTGAGAGACGCTGTGGCAGGCTCGGCACAGCACTGAAG GTACTAATAGACATGATTCAAGATAACGGAGAGCCTCCAAAGAAGAAGCTGEST: gi|349819862|gb|FQ404534.1|FQ404534
genomic: TCTGGGTGGTGCGTGAGAGACGCTGTGGCAGGCTCGGCACAGCACTGAAGgtattcttct ... tctggatcagGTACTAGTAGACATGATTCAAGATAACGGAGAGCCTCCAAAGAAGAAGCTG
EST: TCTGGGTGGTGCGTGAGAGACGCTGTGGCAGGCTCGGCACAGCACTGAAG GTACTAAGTAGACATGATTCAAGATAACGGAGAGCCTCCAAAGAAGAAGCTEST: gi|349807376|gb|FQ401368.1|FQ401368
genomic: TCTGGGTGGTGCGTGAGAGACGCTGTGGCAGGCTCGGCACAGCACTGAAGgtattcttct ... tctggatcagGTACTA-GTAGACATGATTCAAGATAACGGAGAGCCTCCAAAGAAGAAGCT
EST: TCTGGGTGGTGCGTGAGAGACGCTGTGGCAGGCTCGGCACAGCACTGAAG GTACTAATAGACATGATTCAAGATAACGGAGAGCCTCCAAAGAAGAAGCTGEST: gi|349814881|gb|FQ410104.1|FQ410104
genomic: TCTGGGTGGTGCGTGAGAGACGCTGTGGCAGGCTCGGCACAGCACTGAAGgtattcttct ... tctggatcagGTACTAGTAGACATGATTCAAGATAACGGAGAGCCTCCAAAGAAGAAGCTG
EST: TCTGGGTGGTGCGTGAGAGACGCTGTGGCAGGCTCGGCACGGCACTGAAG GTACTAATAGACATGATTCAAGATAACGGAGAACCTCCAAAGAAGAAACTGEST: gi|352795665|gb|FQ480253.1|FQ480253
genomic: TCTGGGTGGTGCGTGAGAGACGCTGTGGCAGGCTCGGCACAGCACTGAAGgtattcttct ... tctggatcagGTACTAGTAGACATGATTCAAGATAACGGAGAGCCTCCAAAGAAGAAGCTG
EST: TCTGGGTGGTGCGTGAGAGACGCTGTGGCAGGCTCGGCACAGCACTGAAG GTACTAGTAGACATGATTCAAGATAACGGAGAGCCTCCAAAGAAGAAGCTGEST: gi|349812607|gb|FQ407226.1|FQ407226
genomic: TCTGGGTGGTGCGTGAGAGACGCTGTGGCAGGCTCGGCACAGCACTGAAGgtattcttct ... tctggatcagGTACTAGTAGACATGATTCAAGATAACGGAGAGCCTCCAAAGAAGAAGCTG
EST: TCTGGGTGGTGCGTGAGAGACGCTGTGGCAGGCTCGGCACAGCACTGAAG GTACTAATAGACATGATTCAAGATAACGGAGAGCCTCCCAAGAAGAAGCTGEST: gi|349815086|gb|FQ410309.1|FQ410309
genomic: TCTGGGTGGTGCGTGAGAGACGCTGTGGCAGGCTCGGCACAGCACTGAAGgtattcttct ... tctggatcagGTACTAGTAGACATGATTCAAGATAACGGAGAGCCTCCAAAGAAGAAGCTG
EST: TCTGGGTGGTGCGTGAGAGACGCTGTGGCAGGCTCGGCACAGCACTGAAG GTACTAATAGACATGATTCAAGATAACGGAGAGCCTCCAAAGAAGAAGCCGEST: gi|351047462|gb|FQ454954.1|FQ454954
genomic: TCTGGGTGGTGCGTGAGAGACGCTGTGGCAGGCTCGGCACAGCACTGAAGgtattcttct ... tctggatcagGTACTAGTAGACATGATTCAAGATAACGGAGAGCCTCCAAAGAAGAAGCTG
EST: TCTGGGTGGTGCGTGAGAGACGCTGTGGCAGGCTCGGCACAGCACTGAAG GTACTAGTAGACATGATTCAAGATAACGGAGAGCCTCCAAAGAAGAAGCTGEST: gi|110359847|gb|EC922069.1|EC922069
genomic: TCTGGGTGGTGCGTGAGAGACGCTGTGGCAGGCTCGGCACAGCACTGAAGgtattcttct ... tctggatcagGTACTAGTAGACATGATTCAAGATAACGGAGAGCCTCCAAAGAAGAAGCTG
EST: TCTGGGTGGTGCGTGAGAGACGCTGTGGCAGGCTCGGCACAGCACTGAAG GTACTAGTAGACATGATTCAAGATAACGGAGAGCCTCCAAAGAAGAAGCTGEST: gi|351053468|gb|FQ459215.1|FQ459215
genomic: TCTGGGTGGTGCGTGAGAGACGCTGTGGCAGGCTCGGCACAGCACTGAAGgtattcttct ... tctggatcagGTACTAGTAGACATGATTCAAGATAACGGAGAGCCTCCAAAGAAGAAGCTG
EST: TCTGGGTGGTGCGTGAGAGACGCTGTGGCAGGCTCGGCACAGCACTGAAG GTACTAGTAGACATGATTCAAGATAACGGAGAGCCTCCAAAGAAGAAGCTG
genomic: TCTGGGTGGTGCGTGAGAGACGCTGTGGCAGGCTCGGCACAGCACTGAAGgtattcttct ... tctggatcagGTACTAGTAGACATGATTCAAGATAACGGAGAGCCTCCAAAGAAGAAGCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAAGAACTAAAGAAATGGGTGGACATCAAATCCTCTAAATATGGGACCCTCTGGGTGGTGCGTGAGAGACGCTGTGGCAGGCTCGGCACAGCACTGAAGgtattcttcttctatctcatgttctccattaccctcatctgtcagttgtcaacatgacattagaacaatgggaatcgtcagacttctttcagggttttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggaatc