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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGCCAACATGGTTGCATAAGCAGAAAGAAAAGCAGCGAATTATCTGGGCATATAAAATCCTGTTCCTTGATGTTATTTTCCCACTTTCTTTGGAAAAGgtaatttggtttcaagtcctgcttaaacatagagtgctgccttgtttccatttcattcatcttcttatgctttccaacttcacatgcatgtatagcttttcacaatctatcaatgtgtatatctgcag

Basic information

species Vitis vinifera
transcript Vv12s0034g02230.t01
intron # 33
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0034g02230.t01 (Vitis vinifera), 5'ss of exon 33
lower sequence: LOC_Os02g44510.1 (Oryza sativa), 5'ss of exon 12
ATGGCCAACATGGTTGCATAAGCAGAAAGAAAAGCAGCGAATTATCTGGGCATATAAAATCCTGTTCCTTGATGTTATTTTCCCACTTTCTTTGGAAAAGgtaatttggtttcaagtcctgcttaaacatagagtgctgccttgtttccatttcattcatcttcttatgctttccaacttcacatgcatgtatagcttttcacaatctatcaatgtgtatatctgcag
|||||||||||||||||| || |||||||| |||||||||||||| |||||||| || ||| |||| || ||||| || || ||||||||  ||   |||||| |||    | | ||  |  | |  | |  ||           | |   || || | |   || |  |    ||  |   | || ||| |||   || | |   |  |     ||||         
ATGGCCAACATGGTTGCACAAACAGAAAGAGAAGCAGCGAATTATATGGGCATACAAGATCTTGTTTCTAGATGTCATATTTCCACTTTCACTGAGGAAGgtatttt---cttatgttatattcatccttgtagattcatgaccatccttatttatacgttaactaagcca---cagttcatcgtg-atggataatattactctgacactttccatgtag--------

upper sequence: Vv12s0034g02230.t01 (Vitis vinifera), 5'ss of exon 33
lower sequence: GRMZM5G846198_T02 (Zea mays), 5'ss of exon 5
ATGGCCAACATGGTTGCATAAGCAGAAAGAAAAGCAGCGAATTATCTGGGCATATAAAATCCTGTTCCTTGATGTTATTTTCCCACTTTCTTTGGAAAAGgtaatttggtttcaagtcctgcttaaacatagagtgctgccttgtttccatttcattcatcttcttatgctttccaacttcacatgcatgtatagcttttcacaatctatcaatgtgtatatctgcag--
||||||||||||||| || ||||||||||| |||||  | ||||| ||||||||||| ||| | || || ||||| ||||| ||||||||  ||   ||||||               ||| |  ||   ||  || ||   |||  | ||| |||   |||| ||  |      ||  | |  ||      |   | |  | | | |  | |||    | ||||     
ATGGCCAACATGGTTACACAAGCAGAAAGAGAAGCAAAGGATTATATGGGCATATAAGATCTTATTTCTGGATGTCATTTTTCCACTTTCACTGAGGAAGgtaccccccccctg----ctgttctaat-cagcttg-tgatgtgtg-caattccatcactcttttttagaacattaaaataatctgaccacgt---tctaaaaacttttcccatgatactctctgtgtag

upper sequence: Vv12s0034g02230.t01 (Vitis vinifera), 5'ss of exon 33
lower sequence: GLYMA05G30230.1 (Glycine max), 5'ss of exon 33
ATGGCCAACATGGTTGCATAAGCAGAAAGAAAAGCAGCGAATTATCTGGGCATATAAAATCCTGTTCCTTGATGTTATTTTCCCACTTTCTTTGGAAAAGgtaatttggtttcaagtcctgcttaaacatagagtgctgccttgtttccatttcattcatcttcttatgctttccaacttcacatgcatgtatagcttttcacaatctatcaatgtgtatatctgcag
 ||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||| | ||||| ||||| |||||||| ||||||||||| ||||||     |||||   | |||| | ||  |  |    |    | |||   |||    ||  |  ||    | ||  ||| ||||  |   || |   ||                             
GTGGCCCACATGGTTGCATAAGCAGAAAGAAAAGCAGCGAATAATTTGGGCATATAAAATCTTATTCCTAGATGTCATTTTCCCCCTTTCTTTGGAGAAGgtatcacagtttcttcttctgcatcaagttccatgcttttggtttttgtcttttgcacaattaatttcaatgtcagactacaca-actcttagaatgttgg---------------------------

upper sequence: Vv12s0034g02230.t01 (Vitis vinifera), 5'ss of exon 33
lower sequence: GLYMA08G13400.1 (Glycine max), 5'ss of exon 35
ATGGCCAACATGGTTGCATAAGCAGAAAGAAAAGCAGCGAATTATCTGGGCATATAAAATCCTGTTCCTTGATGTTATTTTCCCACTTTCTTTGGAAAAGgtaatttggtttcaagtcctgcttaaacatagagtgctgccttgtttccatttcattcatcttcttatgctttccaacttcaca-tgcatgtatagcttttcacaatctatcaatgtgtata----tctgcag----------------------------------
 ||||| ||||||||||||||||||||||||||||||||||  || ||||||||||||||| | ||||| ||||| |||||||| ||||||||||| ||||||     |||||   | || |||   |||  ||| |     | |||   |||  |   |     |||   || |||  ||||| | ||   ||    |  || |    || ||    || |      | |||                                  
GTGGCCCACATGGTTGCATAAGCAGAAAGAAAAGCAGCGAAGAATTTGGGCATATAAAATCTTATTCCTAGATGTCATTTTCCCCCTTTCTTTGGAGAAGgtaccacagtttc---ttcttcttctgcatcaagttccatgctttttgt-ttttgtcttttgcactattaatttcaatgtcacactacaca-atgctgtgacaaagataatgaagaattaaaatcccttacaggaaaatctgtctaaaatctaccaatattatgcag

upper sequence: Vv12s0034g02230.t01 (Vitis vinifera), 5'ss of exon 33
lower sequence: GLYMA08G20020.1 (Glycine max), 5'ss of exon 32
ATGGCCAACATGGTTGCATAAGCAGAAAGAAAAGCAGCGAATTATCTGGGCATATAAAATCCTGTTCCTTGATGTTATTTTCCCACTTTCTTTGGAAAAGgtaatttggttt-caagtcctgctt--aaacatagagtgctgccttgtttccattt-cattcatcttcttatgctttc-ca---acttcacatg-cat--gtatagcttttcacaatctatc-aatgtgtatatctgcag--------------
|||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||  | ||||||||||| || || || ||||| ||||| ||||||   || ||| |   | |||| |  || |  |   |  |   |||||  | | | || || |  | | ||| | || ||   ||  |||||| |||    |  | |  |   |||  |   ||  | | ||  |  |               
ATGGCCTACATGGTTGCATAAGCAGAAAGAAAAGCAGCGAATAATTTGGGCATATAAAATTTTATTCCTTGATGTCATCTTTCCCCTTTCCTTGGAGAAGgtatcatgattttcttcttctgcatcaaatcccatgcttttattttgttctcttctgcactcttaatgtcatggtgtcacatgcaccacacatggcattgacaaggatgctggtaatgaaaagaaaatttttacttaaaaatttgtgtttgcag

upper sequence: Vv12s0034g02230.t01 (Vitis vinifera), 5'ss of exon 33
lower sequence: AT1G71220.2 (Arabidopsis thaliana), 5'ss of exon 32
ATGGCCAACATGGTTGCATAAGCAGAAAGAAAAGCAGCGAATTATCTGGGCATATAAAATCCTGTTCCTTGATGTTATTTTCCCACTTTCTTTGGAAAAGgtaatttggtttcaagtcctgcttaaacatagagtgctgccttgtttccatttcattcatcttcttatgctttccaacttcacatgcatgtatagcttttcacaatctatcaatgtgtatatctgcag
||||||  | ||||||||||| |||||||||||||| |||||||| ||||| || ||||| || ||||||||||| || || || || || ||||||||||||     | |   | |     ||     |    |||    ||| | |  |   |    ||    || | | | | ||   |  ||  | | |||                                 
ATGGCCGTCCTGGTTGCATAAACAGAAAGAAAAGCAACGAATTATTTGGGCCTACAAAATTCTTTTCCTTGATGTCATATTTCCTCTCTCATTGGAAAAGgtacagatgatcatattttcatttctttct----tgcgattttgatgct-tggaagatgtcactataaggtattcgac---atgtgt-tctgtag---------------------------------