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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGCGGGCCCAGAAGGTATTGCTTCACTTATCGAAAATTGGTGATTCGGCATCAGATTTGCAATCTCTGCCTCAGGGTCTTGCAGCCCTCCTACAGAAGgtaaaccttcagatcataattacttgctttattgaataatttatctcctggaatctggtctgattggtgcaatacaatgcag

Basic information

species Vitis vinifera
transcript Vv18s0001g04980.t01
intron # 32
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351042775|gb|FQ431253.1|FQ431253
EST:     CATCAGATTTGCAATCTCTGCCTCAGGGTCTTGCAGCCCTCCTACAGAAG                         GTGGAGCCCTCAAGCCGAGCGCAATTGATTGGGGAACTCCGGAAGGTGCTC
genomic: CATCAGATTTGCAATCTCTGCCTCAGGGTCTTGCAGCCCTCCTACAGAAGgtaaaccttc ... tacaatgcagGTGGAGCCCTCAAGCCGAGCGCAATTGATTGGGGAACTCCGGAAGGTGCTC
EST: gi|34543074|gb|CF511306.1|CF511306
EST:     CATCAGATTTGCAATCTCTGCCTCAGGGTCTTGCAGCCCTCCTACAGAAG                         GTGGAGCCCTCAAGCCGAGCGCAATTGATCGGGGAACTCCGGAAGGTGCTC
genomic: CATCAGATTTGCAATCTCTGCCTCAGGGTCTTGCAGCCCTCCTACAGAAGgtaaaccttc ... tacaatgcagGTGGAGCCCTCAAGCCGAGCGCAATTGATTGGGGAACTCCGGAAGGTGCTC
EST: gi|34542989|gb|CF511221.1|CF511221
EST:     CATCAGATTTGCAATCTCTGCCTCAGGGTCTTGCAGCCCTCCTACAGAAG                         GTGGAGCCCTCAAGCCGAGCGCAATTGATCGGGGAACTCCGGAAGGTGCTC
genomic: CATCAGATTTGCAATCTCTGCCTCAGGGTCTTGCAGCCCTCCTACAGAAGgtaaaccttc ... tacaatgcagGTGGAGCCCTCAAGCCGAGCGCAATTGATTGGGGAACTCCGGAAGGTGCTC
EST: gi|351019872|gb|FQ439689.1|FQ439689
EST:     CATCAGATTTGCAATCTCTGCCTCAGGGTCTTGCAGCCCTCCTACAGAAG                         GTGGAGCCCTCAAGCCGAGCGCAATTGATTGGGGAACTCCGGAAGGTGCTC
genomic: CATCAGATTTGCAATCTCTGCCTCAGGGTCTTGCAGCCCTCCTACAGAAGgtaaaccttc ... tacaatgcagGTGGAGCCCTCAAGCCGAGCGCAATTGATTGGGGAACTCCGGAAGGTGCTC
EST: gi|110700607|gb|EE077411.1|EE077411
EST:     CATCAGATTTGCAATCTCTGCCTCAGGGTCTTGCAGCCCTCCTACAGAAG                         GTGGAGCCCTCAAGCCGAGCGCAATTGATCGGGGAACTCCGGAAGGTGCTC
genomic: CATCAGATTTGCAATCTCTGCCTCAGGGTCTTGCAGCCCTCCTACAGAAGgtaaaccttc ... tacaatgcagGTGGAGCCCTCAAGCCGAGCGCAATTGATTGGGGAACTCCGGAAGGTGCTC
EST: gi|351033760|gb|FQ447798.1|FQ447798
EST:     CATCAGATTTGCAATCTCTGCCTCAGGGTCTTGCAGCCCTCCTACAGAAG                         GTGGAGCCCTCAAGCCGAGCGCAATTGATTGGGGAACTCCGGAAGGTGCTC
genomic: CATCAGATTTGCAATCTCTGCCTCAGGGTCTTGCAGCCCTCCTACAGAAGgtaaaccttc ... tacaatgcagGTGGAGCCCTCAAGCCGAGCGCAATTGATTGGGGAACTCCGGAAGGTGCTC
EST: gi|37187621|gb|CF606974.1|CF606974
EST:     CATCAGATTTGCAATCTCTGCCTCAGGGTCTTGCAGCCCTCCTACAGAAG                         GTGGAGCCCTCAAGCCGAGCGCAATTGATTGGGGAACTCCGGAAGGTGCTC
genomic: CATCAGATTTGCAATCTCTGCCTCAGGGTCTTGCAGCCCTCCTACAGAAGgtaaaccttc ... tacaatgcagGTGGAGCCCTCAAGCCGAGCGCAATTGATTGGGGAACTCCGGAAGGTGCTC
EST: gi|110694981|gb|EE072478.1|EE072478
EST:     CATCAGATTTGCAATCTCTGCCTCAGGGTCTTGCAGCCCTCCTACAGAAG                         GTGGAGCCCTCAAGCCGAGCGCAATTGATCGGGGAACTCCGGAAGGTGCTC
genomic: CATCAGATTTGCAATCTCTGCCTCAGGGTCTTGCAGCCCTCCTACAGAAGgtaaaccttc ... tacaatgcagGTGGAGCCCTCAAGCCGAGCGCAATTGATTGGGGAACTCCGGAAGGTGCTC
EST: gi|110371472|gb|EC935523.1|EC935523
EST:     CATCAGATTTGCAATCTCTGCCTCAGGGTCTTGCAGCCCTCCTACAGAAG                         GTGGAGCCCTCAAGCCGAGCGCAATTGATCGGGGAACTCCGGAAGGTGCTC
genomic: CATCAGATTTGCAATCTCTGCCTCAGGGTCTTGCAGCCCTCCTACAGAAGgtaaaccttc ... tacaatgcagGTGGAGCCCTCAAGCCGAGCGCAATTGATTGGGGAACTCCGGAAGGTGCTC
EST: gi|110379667|gb|EC944879.1|EC944879
EST:     CATCAGATTTGCAATCTCTGCCTCAGGGTCTTGCAGCCCTCCTACAGAAG                         GTGGAGCCCTCAAGCCGAGCGCAATTGATCGGGGAACTCCGGAAGGTGCTC
genomic: CATCAGATTTGCAATCTCTGCCTCAGGGTCTTGCAGCCCTCCTACAGAAGgtaaaccttc ... tacaatgcagGTGGAGCCCTCAAGCCGAGCGCAATTGATTGGGGAACTCCGGAAGGTGCTC