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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGACGTGCTAAAGTAGTTGGGCAAGCCCTTGCTGGTGTTCCCTTGTGGCAGCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAGgtaaacatgagattatattgattttttttttaattgattttgttatatagtttctattgtaggcatttgattggtaaactgcaccttttttag

Basic information

species Vitis vinifera
transcript Vv17s0000g02140.t01
intron # 32
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g02140.t01 (Vitis vinifera), 5'ss of exon 32
lower sequence: GLYMA07G11610.1 (Glycine max), 5'ss of exon 30
AGACGTGCTAAAGTAGTTGGGCAAGCCCTTGCTGGTGTTCCCTTGTGGCAGCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAGgtaaacatgagattatatt-gattttttttttaattgattttgttatatagtttctattgtaggcatttgat-tggtaaa--ctgcaccttttttag----------------------------------------------
||| |||| ||| ||||||| ||||| ||||||||| |||||||||||||  ||||||| ||||||||||| || |||||||| || ||||| |||||||||||   |    | || ||  |||||| ||||  || |||    | | ||     |||  |  | || || |   |||||  ||  | |||  ||                                                
AGATGTGCGAAAATAGTTGGTCAAGCACTTGCTGGTATTCCCTTGTGGCAATTAGGCCCTGAAAGTAGACACCCTGGAGTTCCTTACATTGTCTTCCCAGgtaatatttttgtaattttcaatttttctttttcttaattacagtttctaacca-tatc-tgagtatctggtgctgtaaaatctatatcttcctttattcttcaatatatttcatcttatcaaagatattttgtttctggtag

upper sequence: Vv17s0000g02140.t01 (Vitis vinifera), 5'ss of exon 32
lower sequence: AT1G18270.2 (Arabidopsis thaliana), 5'ss of exon 34
AGACGTGCTAAAGTAGTTGGGCAAGCCCTTGCTGGTGTTCCCTTGTGGCAGCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAGgtaaacatgagattatattgattttttttttaattgattttgttatatagtttctattgtaggcatttgattggtaaactgcaccttttttag
 |||||||    ||  |||| ||||||||||||||||||||  | ||| || |||| || ||||||||||||||||| || || || ||||||||||| ||||||  | |  || |||| |     |||  || ||| |           ||  || |  |  | |||   |  ||     ||          
CGACGTGCACTTGTGATTGGTCAAGCCCTTGCTGGTGTTCCAGTATGGAAGTTAGGTCCAGAAAGTAGACATCCAGGGGTCCCCTACATTGTTTTCCCTGgtaaatcttaatttgtattcaaaacattt--aactgaataaaaataggtattcttaatcaactctttttccttatatgtaacag---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349820359|gb|FQ403975.1|FQ403975
EST:     GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAG                         GTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
genomic: GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAGgtaaacatga ... ccttttttagGTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
EST: gi|349819138|gb|FQ412032.1|FQ412032
EST:     GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAG                         GTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
genomic: GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAGgtaaacatga ... ccttttttagGTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
EST: gi|349824597|gb|FQ413264.1|FQ413264
EST:     GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAG                         GTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
genomic: GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAGgtaaacatga ... ccttttttagGTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
EST: gi|71860468|gb|DT009523.1|DT009523
EST:     GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAG                         GTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
genomic: GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAGgtaaacatga ... ccttttttagGTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
EST: gi|71887135|gb|DT036190.1|DT036190
EST:     CCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAG                         GTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
genomic: CCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAGgtaaacatga ... ccttttttagGTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
EST: gi|30253243|gb|CB970794.1|CB970794
EST:     GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAG                         GTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
genomic: GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAGgtaaacatga ... ccttttttagGTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
EST: gi|349817092|gb|FQ399839.1|FQ399839
EST:     GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAG                         GTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
genomic: GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAGgtaaacatga ... ccttttttagGTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
EST: gi|349808649|gb|FQ405793.1|FQ405793
EST:     GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAG                         GTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
genomic: GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAGgtaaacatga ... ccttttttagGTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
EST: gi|30323090|gb|CD006352.1|CD006352
EST:     GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAG                         GTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
genomic: GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAGgtaaacatga ... ccttttttagGTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
EST: gi|32247669|gb|CD713488.1|CD713488
EST:     GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAG                         GTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
genomic: GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAGgtaaacatga ... ccttttttagGTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
EST: gi|349826605|gb|FQ418696.1|FQ418696
EST:     GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAG                         GTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
genomic: GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAGgtaaacatga ... ccttttttagGTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
EST: gi|349824745|gb|FQ414603.1|FQ414603
EST:     GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAG                         GTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
genomic: GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAGgtaaacatga ... ccttttttagGTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
EST: gi|30326313|gb|CD009575.1|CD009575
EST:     GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAG                         GTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
genomic: GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAGgtaaacatga ... ccttttttagGTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
EST: gi|30130704|gb|CB916043.1|CB916043
EST:     GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAG                         GTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
genomic: GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAGgtaaacatga ... ccttttttagGTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
EST: gi|30324336|gb|CD007598.1|CD007598
EST:     GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAG                         GTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
genomic: GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAGgtaaacatga ... ccttttttagGTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
EST: gi|26257761|gb|CA808824.1|CA808824
EST:     ACTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAG                         GTAATGTTGGTGACAGTAAAGCACTGGCAGACGTAGTGAAATCTTGGGTTC
genomic: GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAGgtaaacatga ... ccttttttagGTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
EST: gi|37190358|gb|CF609707.1|CF609707
EST:     GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAG                         GTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
genomic: GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAGgtaaacatga ... ccttttttagGTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
EST: gi|32268416|gb|CD717575.1|CD717575
EST:     GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAG                         GTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
genomic: GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAGgtaaacatga ... ccttttttagGTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
EST: gi|349820676|gb|FQ408505.1|FQ408505
EST:     GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAG                         GTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
genomic: GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAGgtaaacatga ... ccttttttagGTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
EST: gi|349808888|gb|FQ406738.1|FQ406738
EST:     GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAG                         GTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC
genomic: GCTAGGCCCCGAAAGTAGACATCCAGGAGTTCCATATATTGTTTTCCCAGgtaaacatga ... ccttttttagGTAATGTTGGTGACAGTAAAGCACTGGCAGATGTAGTGAAATCTTGGGTTC