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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAATGAAAAAGAAGATGGAGACGACTCGGGACCAGTTAGCTGAGGCACTGTACCAAAAAGGACTGGCACTGGCAGAGATTGAATCTTTGAAAgtaggaattgtttctcttttatgtaaatgagataactgtttaattccacaattttgttcttttactgataactttctagattccttctgataatgattat...

Basic information

species Vitis vinifera
transcript Vv16s0050g00490.t01
intron # 32
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349809590|gb|FQ414480.1|FQ414480
EST:     AGGCACTGTACCAAAAAGGACTGGCACTGGCAGAGATTGAATCTTTGAAA                         GGTGAGAAGGCTCCAGAAGCAGCTGCAGCTGCAGCTGAAGGCACAAAAGAT
genomic: AGGCACTGTACCAAAAAGGACTGGCACTGGCAGAGATTGAATCTTTGAAAgtaggaattg ... tgtatagcagGGTGAGAAGGCTCCAGAAGCAGCTGCAGCTG-A----A-GGCACAAAAGAT
EST: gi|349817461|gb|FQ407251.1|FQ407251
EST:     AGGCACTGTACCAAAAAGGACTGGCACTGGCAGAGATTGAATCTTTGAAA                         GGTGAGAAGGCTCCAGAAGCAGCTGCAGCTGCAGCTGAAGGCACAAAAGAT
genomic: AGGCACTGTACCAAAAAGGACTGGCACTGGCAGAGATTGAATCTTTGAAAgtaggaattg ... tgtatagcagGGTGAGAAGGCTCCAGAAGCAGCTGCAGCTG-A----A-GGCACAAAAGAT
EST: gi|349811562|gb|FQ409558.1|FQ409558
EST:     AGGCACTGTACCAAAAAGGACTGGCACTGGCAGAGATTGAATCTTTGAAA                         GGTGGGAAGGCTCCAGAAGCAGCTGCAGCTGCAGCTGAAGGCACAAAAGAT
genomic: AGGCACTGTACCAAAAAGGACTGGCACTGGCAGAGATTGAATCTTTGAAAgtaggaattg ... tgtatagcagGGTGAGAAGGCTCCAGAAGCAGCTGCAGCTG-A----A-GGCACAAAAGAT
EST: gi|351044162|gb|FQ452835.1|FQ452835
EST:     AGGCACTGTACCAAAAAGGACTGGCACTGGCAGAGATTGAATCTTTGAAA                         GGTGAGAAGGCTCCAGAAGCAGCTGCAGCTGCAGCTGAAGGCACAAAAGAT
genomic: AGGCACTGTACCAAAAAGGACTGGCACTGGCAGAGATTGAATCTTTGAAAgtaggaattg ... tgtatagcagGGTGAGAAGGCTCCAGAAGCAGCTGCAGCTG-A----A-GGCACAAAAGAT
EST: gi|349811041|gb|FQ406029.1|FQ406029
EST:     AGGCACTGTACCAAAAAGGACTGGCACTGGCAGAGATTGAATCTTTGAAA                         GGTGAGAAGGCTCCAGAAGCAGCTGCAGCTGCAGCTGAAGGCACAAAAGAT
genomic: AGGCACTGTACCAAAAAGGACTGGCACTGGCAGAGATTGAATCTTTGAAAgtaggaattg ... tgtatagcagGGTGAGAAGGCTCCAGAAGCAGCTGCAGCTG-A----A-GGCACAAAAGAT
EST: gi|110363895|gb|EC927525.1|EC927525
EST:     CTGGCACTGGCAGAGATTGAATCTTTGAAA                         GGTGAGAAGGCTCCAGAAGCAGCTGCAGCTGAAGGCGCAAAAGATGTAGAC
genomic: CTGGCACTGGCAGAGATTGAATCTTTGAAAgtaggaattg ... tgtatagcagGGTGAGAAGGCTCCAGAAGCAGCTGCAGCTGAAGGCACAAAAGATGTAGAC
EST: gi|110358499|gb|EC922755.1|EC922755
EST:     AGGCACTGTACCAAAAAGGACTGGCACTGGCAGAGATTGAATCTTTGAAA                         GGTGAGAAGGCTCCAGAAGCAGCTGCAGCTGAAGGCGCAAAAGATGTAGAC
genomic: AGGCACTGTACCAAAAAGGACTGGCACTGGCAGAGATTGAATCTTTGAAAgtaggaattg ... tgtatagcagGGTGAGAAGGCTCCAGAAGCAGCTGCAGCTGAAGGCACAAAAGATGTAGAC
EST: gi|349818352|gb|FQ409127.1|FQ409127
EST:     AGGCACTGTACCAAAAAGGACTGGCACTGGCAGAGATTGAATCTTTGAAA                         GGTGAGAAGGCTCCAGAAGCAGCTGCAGCTGAAGGCACAAAAGATGTAGAC
genomic: AGGCACTGTACCAAAAAGGACTGGCACTGGCAGAGATTGAATCTTTGAAAgtaggaattg ... tgtatagcagGGTGAGAAGGCTCCAGAAGCAGCTGCAGCTGAAGGCACAAAAGATGTAGAC
EST: gi|110360244|gb|EC923096.1|EC923096
EST:     AAAAAGGACTGGCACTGGCAGAGATTGAATCTTTGAAA                         GGTGAGAAGGCTCCAGAAGCAGCTGCAGCTGAAGGCGCAAAAGATGTAGAC
genomic: AAAAAGGACTGGCACTGGCAGAGATTGAATCTTTGAAAgtaggaattg ... tgtatagcagGGTGAGAAGGCTCCAGAAGCAGCTGCAGCTGAAGGCACAAAAGATGTAGAC
EST: gi|349824505|gb|FQ413172.1|FQ413172
EST:     AGGCACTGTACCAAAAAGGACTGGCACTGGCAGAGATTGAATCTTTGAAA                         GGTGAGAAGGCTCCAGAAGCAGCTGCAGCTGCAGCTGAAGGCACAAAAGAT
genomic: AGGCACTGTACCAAAAAGGACTGGCACTGGCAGAGATTGAATCTTTGAAAgtaggaattg ... tgtatagcagGGTGAGAAGGCTCCAGAAGCAGCTGCAGCTG-A----A-GGCACAAAAGAT
EST: gi|349824556|gb|FQ413223.1|FQ413223
EST:     AGGCACTGTACCAAAAAGGACTGGCACTGGCAGAGATTGAATCTTTGAAA                         GGTGAGAAGGCTCCAGAAGCAGCTGCAGCTGCAGCTGAAGGCACAAAAGAT
genomic: AGGCACTGTACCAAAAAGGACTGGCACTGGCAGAGATTGAATCTTTGAAAgtaggaattg ... tgtatagcagGGTGAGAAGGCTCCAGAAGCAGCTGCAGCTG-A----A-GGCACAAAAGAT
EST: gi|349814862|gb|FQ410085.1|FQ410085
EST:     AGGCACTGTACCAAAAAGGACTGGCACTGGCAGAGATTGAATCTTTGAAA                         GGTGAGAAGGCTCCAGAAGCAGCTGCAGCTGCAGCTGAAGGCACAAAAGAT
genomic: AGGCACTGTACCAAAAAGGACTGGCACTGGCAGAGATTGAATCTTTGAAAgtaggaattg ... tgtatagcagGGTGAGAAGGCTCCAGAAGCAGCTGCAGCTG-A----A-GGCACAAAAGAT
EST: gi|349813697|gb|FQ413931.1|FQ413931
EST:     AGGCACTGTACCAAAAAGGACTGGCACTGGCAGAGATTGAATCTTTGAAA                         GGTGAGAAGGCTCCAGAAGCAGCTGCAGCTGCAGCTGAAGGCACAAAAGAT
genomic: AGGCACTGTACCAAAAAGGACTGGCACTGGCAGAGATTGAATCTTTGAAAgtaggaattg ... tgtatagcagGGTGAGAAGGCTCCAGAAGCAGCTGCAGCTG-A----A-GGCACAAAAGAT
EST: gi|349811081|gb|FQ406069.1|FQ406069
EST:     AGGCACTGTACCAAAAAGGACTGGCACTGGCAGAGATTGAATCTTTGAAA                         GGTGAGAAGGCTCCAGAAGCAGCTGCAGCTGCAGCTGAAGGCACAAAAGAT
genomic: AGGCACTGTACCAAAAAGGACTGGCACTGGCAGAGATTGAATCTTTGAAAgtaggaattg ... tgtatagcagGGTGAGAAGGCTCCAGAAGCAGCTGCAGCTG-A----A-GGCACAAAAGAT
EST: gi|351045622|gb|FQ440807.1|FQ440807
EST:     AGGCACTGTACCAAAAAGGACTGGCACTGGCAGAGATTGAATCTTTGAAA                         GGTGAGAAGGCTCCAGAAGCAGCTGCAGCTGAAGGCACAAAAGATGTAGAC
genomic: AGGCACTGTACCAAAAAGGACTGGCACTGGCAGAGATTGAATCTTTGAAAgtaggaattg ... tgtatagcagGGTGAGAAGGCTCCAGAAGCAGCTGCAGCTGAAGGCACAAAAGATGTAGAC
EST: gi|349822506|gb|FQ412770.1|FQ412770
EST:     AGGCACTGTACCAAAAAGGACTGGCACTGGCAGAGATTGAATCTTTGAAA                         GGTGAGAAGGCTCCAGAAGCAGCTGCAGCTGCAGCTGAAGGCACAAAAGAT
genomic: AGGCACTGTACCAAAAAGGACTGGCACTGGCAGAGATTGAATCTTTGAAAgtaggaattg ... tgtatagcagGGTGAGAAGGCTCCAGAAGCAGCTGCAGCTG-A----A-GGCACAAAAGAT
EST: gi|349810172|gb|FQ401618.1|FQ401618
EST:     AGGCACTGTACCAAAAAGGACTGGCACTGGCAGAGATTGAATCTTTGAAA                         GGTGAGAAGGCTCCAGAAGCAGCTGCAGCTGCAGCTGAAGGCACAAAAGAT
genomic: AGGCACTGTACCAAAAAGGACTGGCACTGGCAGAGATTGAATCTTTGAAAgtaggaattg ... tgtatagcagGGTGAGAAGGCTCCAGAAGCAGCTGCAGCTG-A----A-GGCACAAAAGAT
EST: gi|349814599|gb|FQ399239.1|FQ399239
EST:     AGGCACTGTACCAAAAAGGACTGGCACTGGCAGAGATTGAATCTTTGAAA                         GGTGAGAAGGCTCCAGAAGCAGCTGCAGCTGCAGCTGAAGGCACAAAAGAT
genomic: AGGCACTGTACCAAAAAGGACTGGCACTGGCAGAGATTGAATCTTTGAAAgtaggaattg ... tgtatagcagGGTGAGAAGGCTCCAGAAGCAGCTGCAGCTG-A----A-GGCACAAAAGAT
EST: gi|349819862|gb|FQ404534.1|FQ404534
EST:     AGGCACTGTACCAAAAAGGACTGGCACTGGCAGAGATTGAATCTTTGAAA                         GGTGAGAAGGCTCCAGAAGCAGCTGCAGCTGAAGGCACAAAAGATGTAGAC
genomic: AGGCACTGTACCAAAAAGGACTGGCACTGGCAGAGATTGAATCTTTGAAAgtaggaattg ... tgtatagcagGGTGAGAAGGCTCCAGAAGCAGCTGCAGCTGAAGGCACAAAAGATGTAGAC
EST: gi|349807376|gb|FQ401368.1|FQ401368
EST:     AGGCACTGTACCAAAAAGGACTGGCACTGGCAGAGATTGAATCTTTGAAA                         GGTGAGAAGGCTCCAGAAGCAGCTGCAGCTGCAGCTGAAGGCACAAAAGAT
genomic: AGGCACTGTACCAAAAAGGACTGGCACTGGCAGAGATTGAATCTTTGAAAgtaggaattg ... tgtatagcagGGTGAGAAGGCTCCAGAAGCAGCTGCAGCTG-A----A-GGCACAAAAGAT
EST: gi|349814881|gb|FQ410104.1|FQ410104
EST:     AGGCACTGTACCAAAAAGGACTGGCACTGGCAGAGATTGAATCTTTGAAA                         GGTGAGAAGGCTCCAGAAGCAGCTGCAGCTGCAGCTGAAGGCACAAAAGAT
genomic: AGGCACTGTACCAAAAAGGACTGGCACTGGCAGAGATTGAATCTTTGAAAgtaggaattg ... tgtatagcagGGTGAGAAGGCTCCAGAAGCAGCTGCAGCTG-A----A-GGCACAAAAGAT
EST: gi|352795665|gb|FQ480253.1|FQ480253
EST:     AGGCACTGTACCAAAAAGGACTGGCACTGGCAGAGATTGAATCTTTGAAA                         GGTGAGAAGGCTCCAGAAGCAGCTGCAGCTGAAGGCACAAAAGATGTAGAC
genomic: AGGCACTGTACCAAAAAGGACTGGCACTGGCAGAGATTGAATCTTTGAAAgtaggaattg ... tgtatagcagGGTGAGAAGGCTCCAGAAGCAGCTGCAGCTGAAGGCACAAAAGATGTAGAC
EST: gi|349812607|gb|FQ407226.1|FQ407226
EST:     AGGCACTGTACCAAAAAGGACTGGCACTGGCAGAGATTGAATCTTTGAAA                         GGTGAGAAGGCTCCAGAAGCAGCTGCAGCTGCAGCTGAAGGCACAAAAGAT
genomic: AGGCACTGTACCAAAAAGGACTGGCACTGGCAGAGATTGAATCTTTGAAAgtaggaattg ... tgtatagcagGGTGAGAAGGCTCCAGAAGCAGCTGCAGCTG-A----A-GGCACAAAAGAT
EST: gi|351056626|gb|FQ442454.1|FQ442454
EST:     CACTGTACCAAAAAGGACTGGCACTGGCAGAGATTGAATCTTTTGAACA
genomic: CACTGTACCAAAAAGGACTGGCACTGGCAGAGATTGAATCTTT-GAA-A
EST: gi|349815086|gb|FQ410309.1|FQ410309
EST:     AGGCACTGTACCAAAAAGGACTGGCACTGGCAGAGATTGAATCTTTGAAA                         GGTGAGAAGGCTCCAGAAGCAGCTGCAGCTGCAGCTGAAGGCACAAAAGAT
genomic: AGGCACTGTACCAAAAAGGACTGGCACTGGCAGAGATTGAATCTTTGAAAgtaggaattg ... tgtatagcagGGTGAGAAGGCTCCAGAAGCAGCTGCAGCTG-A----A-GGCACAAAAGAT
EST: gi|351047462|gb|FQ454954.1|FQ454954
EST:     AGGCACTGTACCAAAAAGGACTGGCACTGGCAGAGATTGAATCTTTGAAA                         GGTGAGAAGGCTCCAGAAGCAGCTGCAGCTGAAGGCACAAAAGATGTAGAC
genomic: AGGCACTGTACCAAAAAGGACTGGCACTGGCAGAGATTGAATCTTTGAAAgtaggaattg ... tgtatagcagGGTGAGAAGGCTCCAGAAGCAGCTGCAGCTGAAGGCACAAAAGATGTAGAC
EST: gi|351026108|gb|FQ428120.1|FQ428120
EST:     AGGCACTGTACCAAAAAGGACTGGCACTGGCAGAGATTGAATCTTTGAAA                         C
genomic: AGGCACTGTACCAAAAAGGACTGGCACTGGCAGAGATTGAATCTTTGAAAgtaggaattg ... tgtatagcag-
EST: gi|351026108|gb|FQ428120.1|FQ428120
EST:     AGGCACTGTACCAAAAAGGACTGGCACTGGCAGAGATTGAATCTTTGAAA                         C
genomic: AGGCACTGTACCAAAAAGGACTGGCACTGGCAGAGATTGAATCTTTGAAAgtaggaattg ... tgtatagcag-
EST: gi|351026108|gb|FQ428120.1|FQ428120
EST:     AGGCACTGTACCAAAAAGGACTGGCACTGGCAGAGATTGAATCTTTGAAA                         C
genomic: AGGCACTGTACCAAAAAGGACTGGCACTGGCAGAGATTGAATCTTTGAAAgtaggaattg ... tgtatagcag-
EST: gi|110359847|gb|EC922069.1|EC922069
EST:     AGGCACTGTACCAAAAAGGACTGGCACTGGCAGAGATTGAATCTTTGAAA                         GGTGAGAAGGCTCCAGAAGCAGCTGCAGCTGAAGGCGCAAAAGATGTAGAC
genomic: AGGCACTGTACCAAAAAGGACTGGCACTGGCAGAGATTGAATCTTTGAAAgtaggaattg ... tgtatagcagGGTGAGAAGGCTCCAGAAGCAGCTGCAGCTGAAGGCACAAAAGATGTAGAC
EST: gi|349816321|gb|FQ399431.1|FQ399431
EST:     AGGCACTGTACCAAAAAGGACTGGCACTGGCAGAGATTGAATCTTTGAAA                         GGTGAGAAGGCTCCAGAAGCAGCTGCAGCTGCAGCTGAAGGCACAAAAGAT
genomic: AGGCACTGTACCAAAAAGGACTGGCACTGGCAGAGATTGAATCTTTGAAAgtaggaattg ... tgtatagcagGGTGAGAAGGCTCCAGAAGCAGCTGCAGCTG-A----A-GGCACAAAAGAT
EST: gi|351053468|gb|FQ459215.1|FQ459215
EST:     AGGCACTGTACCAAAAAGGACTGGCACTGGCAGAGATTGAATCTTTGAAA                         GGTGAGAAGGCTCCAGAAGCAGCTGCAGCTGAAGGCACAAAAGATGTAGAC
genomic: AGGCACTGTACCAAAAAGGACTGGCACTGGCAGAGATTGAATCTTTGAAAgtaggaattg ... tgtatagcagGGTGAGAAGGCTCCAGAAGCAGCTGCAGCTGAAGGCACAAAAGATGTAGAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAAATGAAAAAGAAGATGGAGACGACTCGGGACCAGTTAGCTGAGGCACTGTACCAAAAAGGACTGGCACTGGCAGAGATTGAATCTTTGAAAgtaggaattgtttctcttttatgtaaatgagataactgtttaattccacaattttgttcttttactgataactttctagattccttctgataatgattat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagataa