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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTACCATGATGGAAATCTTATTAGCTGTGTTGGAGTTTGCTGCTTCATATAATTCATATACTAACCTAAGAATGCGCATGCACCATATTCCTGCTGAGAGgtagtgtatttcttttcaatttttttgtttttttgttttttttttagtaagttttgcatttgaatcttttcccccttgtaaccttgaactgcaagactgatagccatttcatgattggatag

Basic information

species Vitis vinifera
transcript Vv11s0016g00170.t01
intron # 31
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g00170.t01 (Vitis vinifera), 5'ss of exon 31
lower sequence: GLYMA13G17610.1 (Glycine max), 5'ss of exon 31
TTACCATGATGGAAATCTTATTAGCTGTGTTGGAGTTTGCTGCTTCATATAATTCATATACTAACCTAAGAATGCGCATGCACCATATTCCTGCTGAGAGgtagtgtatttcttttcaatttttttgtttttttgttttttttttagtaagttttgcatttgaatcttttcccccttgtaaccttgaactgcaagactgatagccatttcatgattggatag
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TTTCTATAATGGACATTTTGCTGTCTTTGTTGGAGTTTGCTGCTTCATATAACTCATCCACCAATCTTAGAACTCGTATGCACCAAATTCCTGATGAAAGgtaagacaatactc----agtatctaattgtcttaattttgttctg------------ttggaatttctttacaattggaatgtaggactttaaggttca---ctaaactattcttggacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110714172|gb|EE090773.1|EE090773
EST:     AATTCATATACTAACCTAAGAATGCGCATGCACCATATTCCTGCTGAGAG                         GCCACCTTTGAATCTTCTTCGTCAGGAGTTAGCAGGAACCTGCATATATCT
genomic: AATTCATATACTAACCTAAGAATGCGCATGCACCATATTCCTGCTGAGAGgtagtgtatt ... gattggatagGCCACCTTTGAATCTTCTTCGTCAGGAGTTAGCAGGAACCTGCATATATCT
EST: gi|27580218|gb|CB002913.1|CB002913
EST:     AATTCATATACTAACCTAAGAATGCGCATGCACCATATTCCTGCTGAGAG                         GCCACCTTTGAATCTTCTTCGTCAGGAGTTAGCAGGAACCTGCATATATCT
genomic: AATTCATATACTAACCTAAGAATGCGCATGCACCATATTCCTGCTGAGAGgtagtgtatt ... gattggatagGCCACCTTTGAATCTTCTTCGTCAGGAGTTAGCAGGAACCTGCATATATCT