Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGTCTGCGAAAAGAATTTAGTTACAACAAGATCCTCAAGGACCTCAAGAAGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAGgtgtgtgtttcaactccttttatggaaaaccatttgtttttattttacctgctgtcataatatgcctaattcgattcacatacgctgttgtgcatttgtag

Basic information

species Vitis vinifera
transcript Vv19s0177g00100.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0177g00100.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os07g34589.2 (Oryza sativa), 5'ss of exon 3
GGGTCTGCGAAAAGAATTTAGTTACAACAAGATCCTCAAGGACCTCAAGAAGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAGgtgtgtgtttcaactcct-tttatggaaaaccat--ttgtttttattttacctgctgtcataatatgcctaattcgattcacatacgctgttgtgcatttgtag
|||  ||   || ||||| || ||||||||||||||||| || |||||||| || || |||||||||||||||||||| || ||||| || || ||||||||||||||   |||     ||| |||      ||  ||   ||| | |  | | |||   || | |  || || | || |    || |||| |           
GGGATTGAAGAAGGAATTCAGCTACAACAAGATCCTCAAAGATCTCAAGAAAGAGTTTTGCTGCAATGGTACTGTTGTCCAGGACCCAGAGCTTGGCCAGgtgtgtgtaataaccgaaatttgtggtgcctgatctttacgtttttctatctttctgagctagtttttctgat-caatgctt-cactctgtag-----------

upper sequence: Vv19s0177g00100.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM5G835323_T02 (Zea mays), 5'ss of exon 3
GGGTCTGCGAAAAGAATTTAGTTACAACAAGATCCTCAAGGACCTCAAGAAGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAGgtgtgtgtttcaactccttttatggaaaaccatttgtttttattttacctgctgtcataatatgcctaattcgattcacatacgctgttgtgcatttgtag
|||  ||   || || || || |||| |||||||||||| || |||||||| || ||||||||||||||||| || || || ||||| ||||| || ||||| || ||    ||||||     |   |||   |      ||    | |  || |       | |  ||||   || |   |  | ||| |||||      
GGGATTGAAGAAGGAGTTCAGCTACAGCAAGATCCTCAAAGATCTCAAGAAAGAGTTCTGCTGCAATGGTACAGTGGTCCAGGACCCAGAACTTGGACAGgtatg-gt----actcct-----gatgaactcgtgtcccctaggccatcgactttagc--ctttctgaattatcttgatggattcggttctgcat------

upper sequence: Vv19s0177g00100.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM5G835323_T01 (Zea mays), 5'ss of exon 3
GGGTCTGCGAAAAGAATTTAGTTACAACAAGATCCTCAAGGACCTCAAGAAGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAGgtgtg-tgtttcaactccttttatggaaaaccatttgtttttattttacctgctgtcataatatgcctaattcgattcacatacgctgttgtgcatttgtag
|||  ||   || || || || |||| |||||||||||| || |||||||| || ||||||||||||||||| || || || ||||| ||||| || ||||| || |  | |   |    |  ||            |     ||   | | |||   ||   ||    ||||| |||    | ||||    ||  | |   
GGGATTGAAGAAGGAGTTCAGCTACAGCAAGATCCTCAAAGATCTCAAGAAAGAGTTCTGCTGCAATGGTACAGTGGTCCAGGACCCAGAACTTGGACAGgtatggtactcctgatgaactcgtgtcccctaggccatcgactttagcctttctgaattatcttgatggattcggttc-tgcatgctgcc-cgctatag---

upper sequence: Vv19s0177g00100.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: EFJ38377 (Selaginella moellendorffii), 5'ss of exon 2
-----GGGTCT----GCGAAAAGAATTTAGTTACAACAAGATCCTCAAGGACCTCAAGAAGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAGgtgtgtgtttcaactccttttatggaaaaccatttgtttttattttacctgctgtcataatatgcctaattcgattcacatacgctgttgtgcatttgtag--------
     | |||     |||||| |     |    |   |  | | || | | |||    ||||| ||    | |||    |   |     |   |    |  || |  || |   |    |   | |   | |   |    |     ||    | | |   |  ||  | |    | |||| | |  | ||    |  || ||     | |        
TGTGAGAGTCCAGCAGCGAAATGGCCGCAAGAGCTTGACCACCGTCCAAGGCCTGCGCAAGGAGTTTAATTACAACAAGATCCTCAAGGACTTCAAAAAGgtaagagagatccatcgccctctttcccctctcagactagagcgaattcccctcttctctcgatcgaattggctcgaattggctctaaatctcgtcgtgggcgacgattgtttggcag

upper sequence: Vv19s0177g00100.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: EFJ14846 (Selaginella moellendorffii), 5'ss of exon 2
-----GGGTCT----GCGAAAAGAATTTAGTTACAACAAGATCCTCAAGGACCTCAAGAAGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAGgtgtgtgtttcaactccttttatggaaaaccatttgtttttattttacctgctgtcataatatgcctaattcgattcacatacgctgttgtgcatttgtag--------
     | |||     |||||| |     |    |   |  | | || | | |||    ||||| ||    | |||    |    |  |||||  |   ||  |||  ||     |   ||  |  ||||           |     ||    | |     |  ||  | |    | |||| | |  | ||    |  || ||     | |        
TGTGAGAGTCCAGCAGCGAAATGGCCGCAAGAGCTTGACCACCGTCCAAGGCCTGCGCAAGGAGTTTAATTACAACAAGA----TCCTCAAGGACTTCAAAAAGgtaagagagatccatcgccctctttccccaggctagagcgaattcccctcttttctcgatcgaattggctcgaattggctctaaatctcgtcgtgggcgacgattgtttggcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22011062|gb|BQ796096.1|BQ796096
EST:     AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAG                         GTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
genomic: AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAGgtgtgtgttt ... gcatttgtagGTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
EST: gi|110407606|gb|EC973213.1|EC973213
EST:     GGTACTGTTGTTCAAGACCCGGAACTAGGCCAG                         GTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
genomic: GGTACTGTTGTTCAAGACCCGGAACTAGGCCAGgtgtgtgttt ... gcatttgtagGTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
EST: gi|26262686|gb|CA813749.1|CA813749
EST:     AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGNCCAG                         GTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
genomic: AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAGgtgtgtgttt ... gcatttgtagGTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
EST: gi|22014451|gb|BQ799485.1|BQ799485
EST:     AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAG                         GTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
genomic: AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAGgtgtgtgttt ... gcatttgtagGTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
EST: gi|32457673|gb|CD798847.1|CD798847
EST:     AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAG                         GTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
genomic: AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAGgtgtgtgttt ... gcatttgtagGTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
EST: gi|34414969|gb|CF413723.1|CF413723
EST:     AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAG                         GTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
genomic: AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAGgtgtgtgttt ... gcatttgtagGTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
EST: gi|110420277|gb|EC986543.1|EC986543
EST:     ATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAG                         GTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
genomic: ATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAGgtgtgtgttt ... gcatttgtagGTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
EST: gi|22010321|gb|BQ795355.1|BQ795355
EST:     AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAG                         GTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
genomic: AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAGgtgtgtgttt ... gcatttgtagGTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
EST: gi|32460003|gb|CD801177.1|CD801177
EST:     GAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGGGCCAG                         GTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCACCCTTTCTTGT
genomic: GAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTA--GGCCAGgtgtgtgttt ... gcatttgtagGTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGT
EST: gi|27586671|gb|CB009366.1|CB009366
EST:     AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAG                         GTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
genomic: AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAGgtgtgtgttt ... gcatttgtagGTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
EST: gi|110397208|gb|EC962936.1|EC962936
EST:     AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAG                         GTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
genomic: AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAGgtgtgtgttt ... gcatttgtagGTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
EST: gi|30136106|gb|CB921444.1|CB921444
EST:     AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAG                         GTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
genomic: AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAGgtgtgtgttt ... gcatttgtagGTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
EST: gi|30128891|gb|CB914230.1|CB914230
EST:     AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAG                         GTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
genomic: AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAGgtgtgtgttt ... gcatttgtagGTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
EST: gi|32459848|gb|CD801022.1|CD801022
EST:     AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAG                         GTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCACCCTTTCTTGTG
genomic: AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAGgtgtgtgttt ... gcatttgtagGTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
EST: gi|30131314|gb|CB916653.1|CB916653
EST:     AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAG                         GTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
genomic: AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAGgtgtgtgttt ... gcatttgtagGTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
EST: gi|27585753|gb|CB008448.1|CB008448
EST:     AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAG                         GTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
genomic: AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAGgtgtgtgttt ... gcatttgtagGTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
EST: gi|22013158|gb|BQ798207.1|BQ798207
EST:     AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAG                         GTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
genomic: AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAGgtgtgtgttt ... gcatttgtagGTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
EST: gi|110408072|gb|EC973693.1|EC973693
EST:     AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAG                         GTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
genomic: AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAGgtgtgtgttt ... gcatttgtagGTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
EST: gi|34320968|gb|CF373722.1|CF373722
EST:     AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAG                         GTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
genomic: AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAGgtgtgtgttt ... gcatttgtagGTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
EST: gi|110421511|gb|EC987809.1|EC987809
EST:     AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAG                         GTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
genomic: AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAGgtgtgtgttt ... gcatttgtagGTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
EST: gi|30296517|gb|CB973311.1|CB973311
EST:     AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAG                         GTTATTCAACTTCAAGGTGATCAGCGAAAGAA
genomic: AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAGgtgtgtgttt ... gcatttgtagGTTATTCAACTTCAAGGTGATCAGCGAAAGAA
EST: gi|30132650|gb|CB917989.1|CB917989
EST:     GTTCAAGACCCGGAACTAGGCCAG                         GTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
genomic: GTTCAAGACCCGGAACTAGGCCAGgtgtgtgttt ... gcatttgtagGTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
EST: gi|22014508|gb|BQ799542.1|BQ799542
EST:     AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAG                         GTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
genomic: AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAGgtgtgtgttt ... gcatttgtagGTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
EST: gi|110375483|gb|EC940472.1|EC940472
EST:     AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAG                         GTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
genomic: AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAGgtgtgtgttt ... gcatttgtagGTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
EST: gi|30133642|gb|CB918981.1|CB918981
EST:     AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAG                         GTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
genomic: AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAGgtgtgtgttt ... gcatttgtagGTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
EST: gi|110402223|gb|EC959593.1|EC959593
EST:     AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAG                         GTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
genomic: AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAGgtgtgtgttt ... gcatttgtagGTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
EST: gi|46919261|gb|CN548590.1|CN548590
EST:     AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAATTAGGCCAG                         GTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
genomic: AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAGgtgtgtgttt ... gcatttgtagGTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
EST: gi|110722364|gb|EE098531.1|EE098531
EST:     AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAG                         GTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
genomic: AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAGgtgtgtgttt ... gcatttgtagGTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
EST: gi|26263392|gb|CA814455.1|CA814455
EST:     AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAG                         GTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
genomic: AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAGgtgtgtgttt ... gcatttgtagGTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
EST: gi|110706968|gb|EE082960.1|EE082960
EST:     AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAG                         GTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
genomic: AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAGgtgtgtgttt ... gcatttgtagGTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
EST: gi|30296476|gb|CB973270.1|CB973270
EST:     AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAG                         GTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
genomic: AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAGgtgtgtgttt ... gcatttgtagGTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
EST: gi|110363430|gb|EC927015.1|EC927015
EST:     AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAG                         GTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
genomic: AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAGgtgtgtgttt ... gcatttgtagGTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
EST: gi|30300979|gb|CB977773.1|CB977773
EST:     AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAATTAGGCCAG                         GTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCACCCTTTTTTGTG
genomic: AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAGgtgtgtgttt ... gcatttgtagGTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
EST: gi|22011007|gb|BQ796041.1|BQ796041
EST:     AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAG                         GTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
genomic: AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAGgtgtgtgttt ... gcatttgtagGTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
EST: gi|22010208|gb|BQ795242.1|BQ795242
EST:     AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAG                         GTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
genomic: AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAGgtgtgtgttt ... gcatttgtagGTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
EST: gi|22008034|gb|BQ793068.1|BQ793068
EST:     AGGAATTCTGCTGCAATGGTACTGTTGATCAAGACCCGGAACTAGGCCAG                         GTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
genomic: AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAGgtgtgtgttt ... gcatttgtagGTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
EST: gi|22014261|gb|BQ799295.1|BQ799295
EST:     AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAG                         GTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
genomic: AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAGgtgtgtgttt ... gcatttgtagGTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
EST: gi|34416404|gb|CF415158.1|CF415158
EST:     CAAGACCCGGAACTAGGCCAG                         GTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
genomic: CAAGACCCGGAACTAGGCCAGgtgtgtgttt ... gcatttgtagGTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
EST: gi|110402090|gb|EC968723.1|EC968723
EST:     AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAG                         GTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
genomic: AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAGgtgtgtgttt ... gcatttgtagGTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
EST: gi|32249891|gb|CD715710.1|CD715710
EST:     AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAG                         GTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
genomic: AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAGgtgtgtgttt ... gcatttgtagGTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
EST: gi|27580781|gb|CB003476.1|CB003476
EST:     AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAG                         GTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
genomic: AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAGgtgtgtgttt ... gcatttgtagGTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
EST: gi|110407800|gb|EC973415.1|EC973415
EST:     AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAG                         GTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
genomic: AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAGgtgtgtgttt ... gcatttgtagGTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
EST: gi|30133247|gb|CB918586.1|CB918586
EST:     AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAG                         GTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG
genomic: AGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAGgtgtgtgttt ... gcatttgtagGTTATTCAACTTCAAGGTGATCAGCGAAAGAATGTTTCAACCTTTCTTGTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGGTCTGCGAAAAGAATTTAGTTACAACAAGATCCTCAAGGACCTCAAGAAGGAATTCTGCTGCAATGGTACTGTTGTTCAAGACCCGGAACTAGGCCAGgtgtgtgtttcaactccttttatggaaaaccatttgtttttattttacctgctgtcataatatgcctaattcgattcacatacgctgttgtgcatttgtag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC