Sequence
atgc intronic sequence ATGC exonic sequenceGTCACTGAGGAGCGGCTTGCTGCCTTATTTAGTAGCTGTGGACAAgtaagttactgtgtctccttcattgtaaatttgtatgttgtattagctgtttaatcagtggttatggttgcttgggtcaattaatatctggttactttat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0176g00140.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA08G18810.1 (Glycine max), 5'ss of exon 3
GTCACTGAGGAGCGGCTTGCTGCCTTATTTAGTAGCTGTGGACAAgtaagttactgtgtctccttcattgtaaatttg--tatgttgtattagctgtttaatcagtggttatggttgcttgggtcaattaatatctggttactttat---
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GTTACTGAGGAGCGGCTTGCTGCCTTATTCAGCAGCTGTGGACAAgtaagtta-tgag---ccttgattgatagcttgattactctttcttagtt-tacaattaggtgcaaatattacataggttaataaatttaaagtagggtatttgt
upper sequence: Vv19s0176g00140.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA15G40060.1 (Glycine max), 5'ss of exon 3
GTCACTGAGGAGCGGCTTGCTGCCTTATTTAGTAGCTGTGGACAAgtaagttactgtgtctccttcattgtaaatttg--tatgttgtattagctgtttaatcagtggttatggttgcttgggtcaattaat---atctggttactttat
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GTTACTGAGGAGCGGCTTGCTGCTTTATTCAGCAGCTGTGGACAAgtaagttatcag----ccttgattgatagcttgattactctttcttagtt-taaagttaggtacaaatattacattggttaataaatttaaactagggtatttgt
upper sequence: Vv19s0176g00140.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT3G14450.1 (Arabidopsis thaliana), 5'ss of exon 3
GTCACTGAGGAGCGGCTTGCTGCCTTATTTAGTAGCTGTGGACAAgtaagtta---ctgtgtctccttcattgtaaatttgtatgttgtattagctgt---ttaatcagtg-gttatggttgcttgggtcaattaatatctggtta---ctttat----------------------------------------------------------------------
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GTGACTGAGGAGGGTCTTGCTGGCTTGTTTAGTAACTGTGGACAAgtaagatgatccttaaaatctttaaatgttggttatatctttctatttcatgtgttttggacaatgtgttaaatttagactagtttttgagtccgtgccaaaggttctgttgaaaaaatgttactttggtggtatagttgtgtgtgtgaagtaacgttaagttcttcttcttttgtgaagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110379205|gb|EC944385.1|EC944385EST: GTCACTGAGGAGCGGCTTGCTGCCTTATTTAGTAGCTGTGGACAA GTTGTTGATTGTCGAGTTTGTGGTGATCCGCATTCAGTTCTTCGTTTTGCA
genomic: GTCACTGAGGAGCGGCTTGCTGCCTTATTTAGTAGCTGTGGACAAgtaagttact ... tattttgaagGTTGTTGATTGTCGAGTTTGTGGTGATCCGCATTCAGTTCTTCGTTTTGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTCACTGAGGAGCGGCTTGCTGCCTTATTTAGTAGCTGTGGACAAgtaagttactgtgtctccttcattgtaaatttgtatgttgtattagctgtttaatcagtggttatggttgcttgggtcaattaatatctggttactttat
- - - GAGGAG
- - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccttc