Sequence
atgc intronic sequence ATGC exonic sequenceTGCAACGATGAGCTACGTTTGGTATTTGAGACAGACAGTACTGACATGTTCAAGATGAATAAGTTGCTAGCTAAACATATAATCCCTCTTGAACCTACTAgtatgtgtctataatcttttcacacaaacacgcacatgatcgtatatcaaaaaatgttaatacaacaataaaataaaaattaaatcactcatatggattaagcttttcttgttttgatccttgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0090g01460.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os08g39310.1 (Oryza sativa), 5'ss of exon 3
TGCAACGATGAGCTACGTTTGGTATTTGAGACAGACAGTACTGACATGTTCAAGATGAATAAGTTGCTAGCTAAACATATAATCCCTCTTGAACCTACTAgtatgtgtctataatcttttcacacaaacacgcaca-tgatcgtatatcaaaaaatgttaatacaacaataaaataaaaattaaatcactcatatggattaagcttttcttgttttgatccttgcag
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TGCAATGATGAGCTGCGTCTAGTCTTTGAGACAGATAGCACTGATATGTTCAAGATGAACAAGCTTTTAGCTAAGCATATTAGACCACTTGAGGCAAAAAgtaggtcttcttcactctccagctatgttctgcaaaataatcaagcttt------tgtttgtggaataa-gtgctcaaaattcttgcag--------------------------------------
upper sequence: Vv19s0090g01460.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA08G43590.2 (Glycine max), 5'ss of exon 3
TGCAACGATGAGCTACGTTTGGTATTTGAGACAGACAGTACTGACATGTTCAAGATGAATAAGTTGCTAGCTAAACATATAATCCCTCTTGAACCTACTAgtatgtgtctataatcttttcacacaaacacgcacatgatcgtatatcaaaaaatgttaatacaacaataaaataaaaattaaatcactcatatggattaagcttttcttgttttgatccttgcag
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TGCAATGATGAACTGCGTGTGGTGTTTGAGACGGATTGTACTGATATGTTCAAGATGAATAAGTTGCTATCTAAGCACATTATCCCCCTTGAACCAACCAgtaggtatctaggttatgcttatttttatg---acattgtggtttattgtgttgtttaaattcttcttttttgtgcactttcag------------------------------------------
upper sequence: Vv19s0090g01460.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT4G22360.1 (Arabidopsis thaliana), 5'ss of exon 3
TGCAACGATGAGCTACGTTTGGTATTTGAGACAGACAGTACTGACATGTTCAAGATGAATAAGTTGCTAGCTAAACATATAATCCCTCTTGAACCTACTAgtatgtgtc---tataatcttttcacacaaacacgcacatgatcgtatatcaaaaaatgttaatacaacaataaaataaaaattaaatcactcatatggattaagcttttcttgttttgatccttgcag
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TGTGATGATGCGTTGCGTGTGGTTTTTGAGACTGATTGCACTGACATGTTCAAGATGAATAAGTTGCTTGCTAAGCATATTCTCCCGCTTGATCCATCAAgtaatggttaaacacaagcgttttttgctgagttccaactgtgcttggtttgttcaaggttactg--actgt----------ttgagtcacttttggcag-----------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110398549|gb|EC964989.1|EC964989EST: CAAGATGAATAAGTTGCTAGCTAAACATATAATCCCTCTTGAACCTACTA AACAGTCAGGTGAACAGTCGAAGAAATTAAAGGTTGATGCAGGAGCTGGAA
genomic: CAAGATGAATAAGTTGCTAGCTAAACATATAATCCCTCTTGAACCTACTAgtatgtgtct ... atccttgcagAACAGTCAGGTGAACAGTCGAAGAAATTAAAGGTTGATGCAGGAGCTGGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGCAACGATGAGCTACGTTTGGTATTTGAGACAGACAGTACTGACATGTTCAAGATGAATAAGTTGCTAGCTAAACATATAATCCCTCTTGAACCTACTAgtatgtgtctataatcttttcacacaaacacgcacatgatcgtatatcaaaaaatgttaatacaacaataaaataaaaattaaatcactcatatggattaagcttttcttgttttgatccttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGATG