1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GGTGCATAGGTACTGTTGATCATGATGTTGTAGAGCTGAATAATCTGCACCGACAGgtacaaatttaaaatatgcactctggttctctagtcgtcatgatgatgttggtggtactaataagaaatattcggcctaattttattcttggtgccccat...
species | Vitis vinifera |
transcript | Vv19s0090g01020.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TAGGTACTGTTGATCATGATGTTGTAGAGCTGAATAATCTGCACCGACAG ATTATCCACACTGAAGCATATGTTGGTCAACCAAAAGTACAATCTGCTGCTEST: gi|161721075|gb|FC070004.1|FC070004
genomic: TAGGTACTGTTGATCATGATGTTGTAGAGCTGAATAATCTGCACCGACAGgtacaaattt ... tatattgcagATTATCCACACTGAAGCATATGTTGGTCAACCAAAAGTACAATCTGCTGCT
EST: TAGGTACTGTTGATCATGATGTTGTAGAGCTGAATAATCTGCACCGACAG ATTATCCACACTGAAGCATATGTTGGTCAACCAAAAGTACAATCTGCTGCTEST: gi|71856388|gb|DT005443.1|DT005443
genomic: TAGGTACTGTTGATCATGATGTTGTAGAGCTGAATAATCTGCACCGACAGgtacaaattt ... tatattgcagATTATCCACACTGAAGCATATGTTGGTCAACCAAAAGTACAATCTGCTGCT
EST: TAGGTACTGTTGATCATGATGTTGTAGAGCTGAATAATCTGCACCGACAG ATTATCCACACTGAAGCATATGTTGGTCAACCAAAAGTACAATCTGCTGCT
genomic: TAGGTACTGTTGATCATGATGTTGTAGAGCTGAATAATCTGCACCGACAGgtacaaattt ... tatattgcagATTATCCACACTGAAGCATATGTTGGTCAACCAAAAGTACAATCTGCTGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTGCATAGGTACTGTTGATCATGATGTTGTAGAGCTGAATAATCTGCACCGACAGgtacaaatttaaaatatgcactctggttctctagtcgtcatgatgatgttggtggtactaataagaaatattcggcctaattttattcttggtgccccat
- - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taagaaa