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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGAAGCTCTATGTACTTACATTGAGAATGATCGCCCATTTTTAGGCATTTGTCTTGGGCTACAGCTACTTTTTGAGTCCAGTGAGGAAAATGGACCAGgtcaattttttaagcgtctatattttctttattctagttccttatcagttgctttcttttattgaacatatctttagtccataaggcagcatgacaggaa...

Basic information

species Vitis vinifera
transcript Vv19s0090g00810.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0090g00810.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA18G10460.1 (Glycine max), 5'ss of exon 4
-GCTGAAGCTCTATGTACTTACATTGAGAATGATCGCCCATTTTTAGGCATTTGTCTTGGGCTACAGCTACTTTTTGAGTCCAGTGAGGAAAATGGACCAGgtcaattttttaagcgtctatattttctttattctagttccttatcagttgctttcttttattgaacatatctttagt-ccataaggcagcatgacaggaa---
 | |||||| |||||| | || ||||| || ||||| |||||||| |||||||||||||| || || ||||||||||| || |||||||| |||||||||||| |  || | |  | ||| || ||| |   || | |||    |||  |     |    | |||||||| | |||| |   |||    |     |    ||   
GGATGAAGCACTATGTTCATATATTGACAAGGATCGTCCATTTTTGGGCATTTGTCTTGGACTTCAACTACTTTTTGAATCTAGTGAGGAGAATGGACCAggtta-cttataagccatctttagtttttgactttttgtt----atcgttacacctacaattttgaacatttttttaatattatagcataaatgaatgccaagct

upper sequence: Vv19s0090g00810.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA18G12920.1 (Glycine max), 5'ss of exon 4
GCTGAAGCTCTATGTACTTACATTGAGAATGATCGCCCATTTTTAGGCATTTGTCTTGGGCTACAGCTACTTTTTGAGTCCAGTGAGGAAAATGGACCAGgtcaattttttaagcgtctatattttctttattctagttccttatcagttgctttcttttattgaacatatctttagt-ccataaggcagcatgacaggaa----
| |||||| |||||| | || ||||| || ||||| |||||| | |||||||||||||| || || ||||||||||| || |||||||| |||||||||||| | || |  |  | ||| || ||| |   || | |||    |||  |     |      |||||||| | |||| |   |||    |     |    ||    
GATGAAGCACTATGTTCATATATTGACAAGGATCGTCCATTTCTGGGCATTTGTCTTGGACTTCAACTACTTTTTGAATCTAGTGAGGAGAATGGACCAGgttagttata-agccatctttagtttttgactttttgtt----atcgttacacctacaactttgaacatttttttaatattatagcataaatgaatgccaagctt

upper sequence: Vv19s0090g00810.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT4G26900.1 (Arabidopsis thaliana), 5'ss of exon 4
GCTGAAGCTCTATGTACTTACATTGAGAATGATCGCCCATTTTTAGGCATTTGTCTTGGGCTACAGCTACTTTTTGAGTCCAGTGAGGAAAATGGACCAGgtcaatttt--ttaagcgtctatattttctttattctag------ttcctta------tcagttgctttcttttattgaacatatctttagtccataa--ggcagcatgacaggaa
||||||||| | || |  || ||||||||||| || |||||| ||||||| |||||||| ||||| |||||||| || || ||||| || ||||||||||||  |  |   ||   |  || ||| || | | ||||||      | |||        |||  | | || |  |||     || | | || |  | ||  |      ||||||   
GCTGAAGCTTTGTGCAAATATATTGAGAATGACCGTCCATTTCTAGGCATATGTCTTGGTCTACAACTACTTTTCGATTCTAGTGAAGAGAATGGACCAGgtttagctccgttgctccactttatattatgtcttctagaatttttccctcgatacattcaactacattatgatatcatgtatttttgtacttaacaactgtatatgtgacag---