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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGATGTAAAGCATAAATCCAAGGACATTCTAGGGGAAGTTTCAAGGACTCATTATGCTATACAgtaagctattactagagcttgttgtgtttggagctcactagagtttaatggaatgcgaacacatgactgtaattataaatgcag

Basic information

species Vitis vinifera
transcript Vv19s0090g00560.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110724992|gb|EE101306.1|EE101306
EST:     AAATCCAAGGACATTCTAGGGGAAGTTTCAAGGACTCATTATGCTATACA                         AACGCTGGATAAAACAATTTCAAATTTGGAGATGGAATTAGCAGCTGCAAG
genomic: AAATCCAAGGACATTCTAGGGGAAGTTTCAAGGACTCATTATGCTATACAgtaagctatt ... ataaatgcagAACGCTGGATAAAACAATTTCAAATTTGGAGATGGAATTAGCAGCTGCAAG
EST: gi|110688432|gb|EE066976.1|EE066976
EST:     AAATCCAAGGACATTCTAGGGGAAGTTTCAAGGACTCATTATGCTATACA                         AACGCTGGATAAAACAATTTCAAATTTGGAGATGGAATTAGCAGCTGCAAG
genomic: AAATCCAAGGACATTCTAGGGGAAGTTTCAAGGACTCATTATGCTATACAgtaagctatt ... ataaatgcagAACGCTGGATAAAACAATTTCAAATTTGGAGATGGAATTAGCAGCTGCAAG
EST: gi|161715741|gb|FC066145.1|FC066145
EST:     AAATCCAAGGACATTCTAGGGGAAGTTTCAAGGACTCATTATGCTATACA                         AACGCTGGATAAAACAATTTCAAATTTGGAGATGGAATTAGCAGCTGCAAG
genomic: AAATCCAAGGACATTCTAGGGGAAGTTTCAAGGACTCATTATGCTATACAgtaagctatt ... ataaatgcagAACGCTGGATAAAACAATTTCAAATTTGGAGATGGAATTAGCAGCTGCAAG
EST: gi|37184436|gb|CF603790.1|CF603790
EST:     AAATCCAAGGACATTCTAGGGGAAGTTTCAAGGACTCATTATGCTATACA                         AACGCTGGATAAAACAATTTCAAATTTGGAGATGGAATTAGCAGCTGCAAG
genomic: AAATCCAAGGACATTCTAGGGGAAGTTTCAAGGACTCATTATGCTATACAgtaagctatt ... ataaatgcagAACGCTGGATAAAACAATTTCAAATTTGGAGATGGAATTAGCAGCTGCAAG