Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGACTGAAGAAGGATTACAGTTACGAGAAGATCCTCAAGGATCTCAAGAAGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAGgtatagcatcaagttcatgtacaacaacaccaaaaggcccatatcacttgttttgatattgagggtttgacaattaacaaacggtgtgtttgttatggtgcag

Basic information

species Vitis vinifera
transcript Vv19s0090g00420.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0090g00420.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA18G11010.1 (Glycine max), 5'ss of exon 2
AGGACTGAAGAAGGATTACAGTTACGAGAAGATCCTCAAGGATCTCAAGAAGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAGgtatagcatcaagttcatgtacaacaacaccaaaaggcccatatcacttgttttgatattgagggtttgacaattaacaaacggtgtgtttgttatggtgcag---------------------------
                        |||||||||||||||||| ||||||||||||||||||||||| || |  || ||||||||||| |||||||||||| |    |||| |  ||     | || |  |  ||   |   |  |||||  |     |    ||  ||| ||   ||  | | |        | |||||                               
------------------------CGAGAAGATCCTCAAGGACCTCAAGAAGGAGTTCTGCTGCAACGGAACCGTGGTGCAGGACAAGGAGCTTGGCAAGAT----CATCCAACTCCAAGGCGACCA-Gcgtaagaacgtctcccacttcctcgttcaggctggccttgtcagg-aaggaccagatcaagattcatggtttttgaccaattggtcttgtttttgttagta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110399610|gb|EC966124.1|EC966124
EST:     AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAG                         GTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTTGTC
genomic: AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAGgtatagcatc ... tatggtgcagGTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC
EST: gi|32460261|gb|CD801435.1|CD801435
EST:     GCAATGGGAATGTGTTGTGCGGGACAAAGAGCTTGGCAAG                         GTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTTGTC
genomic: GCAATGGGAA--TGTTGTGCAGGACAAAGAGCTTGGCAAGgtatagcatc ... tatggtgcagGTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC
EST: gi|110381416|gb|EC934391.1|EC934391
EST:     AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAG                         GTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTTGTC
genomic: AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAGgtatagcatc ... tatggtgcagGTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC
EST: gi|110413107|gb|EC978880.1|EC978880
EST:     AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAG                         GTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC
genomic: AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAGgtatagcatc ... tatggtgcagGTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC
EST: gi|110394027|gb|EC958394.1|EC958394
EST:     AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAG                         GTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTTGTC
genomic: AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAGgtatagcatc ... tatggtgcagGTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC
EST: gi|110399308|gb|EC965807.1|EC965807
EST:     AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAG                         GTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTTGTC
genomic: AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAGgtatagcatc ... tatggtgcagGTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC
EST: gi|34548008|gb|CF516240.1|CF516240
EST:     AGGAGTTCAGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAG                         GTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTTGTC
genomic: AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAGgtatagcatc ... tatggtgcagGTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC
EST: gi|110365571|gb|EC928781.1|EC928781
EST:     AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAG                         GTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTTGTC
genomic: AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAGgtatagcatc ... tatggtgcagGTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC
EST: gi|110732012|gb|EE106936.1|EE106936
EST:     AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAG                         GTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC
genomic: AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAGgtatagcatc ... tatggtgcagGTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC
EST: gi|26262514|gb|CA813577.1|CA813577
EST:     AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAG                         GTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTTGTC
genomic: AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAGgtatagcatc ... tatggtgcagGTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC
EST: gi|32268526|gb|CD717685.1|CD717685
EST:     AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAG                         GTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC
genomic: AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAGgtatagcatc ... tatggtgcagGTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC
EST: gi|110390266|gb|EC955168.1|EC955168
EST:     AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAG                         GTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTTGTC
genomic: AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAGgtatagcatc ... tatggtgcagGTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC
EST: gi|30125889|gb|CB911228.1|CB911228
EST:     AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAG                         GTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC
genomic: AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAGgtatagcatc ... tatggtgcagGTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC
EST: gi|110406320|gb|EC971889.1|EC971889
EST:     GGGAATGTTGTGCAGGACAAAGAGCTTGGCAAG                         GTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC
genomic: GGGAATGTTGTGCAGGACAAAGAGCTTGGCAAGgtatagcatc ... tatggtgcagGTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC
EST: gi|30134865|gb|CB920203.1|CB920203
EST:     AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAG                         GTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC
genomic: AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAGgtatagcatc ... tatggtgcagGTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC
EST: gi|32270786|gb|CD719945.1|CD719945
EST:     AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAG                         GTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC
genomic: AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAGgtatagcatc ... tatggtgcagGTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC
EST: gi|110714445|gb|EE091358.1|EE091358
EST:     AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAG                         GTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTTGTC
genomic: AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAGgtatagcatc ... tatggtgcagGTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC
EST: gi|33408556|gb|CF214183.1|CF214183
EST:     AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAG                         GTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTTGTC
genomic: AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAGgtatagcatc ... tatggtgcagGTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC
EST: gi|110394877|gb|EC960261.1|EC960261
EST:     AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAG                         GTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTTGTC
genomic: AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAGgtatagcatc ... tatggtgcagGTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC
EST: gi|34549846|gb|CF518078.1|CF518078
EST:     AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAG                         GTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTTGTC
genomic: AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAGgtatagcatc ... tatggtgcagGTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC
EST: gi|29783601|gb|CB349899.2|CB349899
EST:     AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAG                         GTTATTCAACTGCAAAGTGATCAGCGAAAGAACGTGTCCAATTTTCTTGTC
genomic: AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAGgtatagcatc ... tatggtgcagGTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC
EST: gi|352782608|gb|FQ476688.1|FQ476688
EST:     AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAG                         GTTATTCAACTGCAAGGTGATCAGTGAAAGAACGTGTCCAATTTTCTCGTC
genomic: AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAGgtatagcatc ... tatggtgcagGTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC
EST: gi|110714735|gb|EE091984.1|EE091984
EST:     AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAG                         GTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTTGTC
genomic: AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAGgtatagcatc ... tatggtgcagGTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC
EST: gi|110376519|gb|EC941583.1|EC941583
EST:     AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAG                         GTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTTGTC
genomic: AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAGgtatagcatc ... tatggtgcagGTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC
EST: gi|26262469|gb|CA813532.1|CA813532
EST:     AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAG                         GTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTTGTC
genomic: AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAGgtatagcatc ... tatggtgcagGTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC
EST: gi|351016410|gb|FQ423837.1|FQ423837
EST:     AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAG                         GTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC
genomic: AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAGgtatagcatc ... tatggtgcagGTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC
EST: gi|110409750|gb|EC975420.1|EC975420
EST:     AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAG                         GTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC
genomic: AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAGgtatagcatc ... tatggtgcagGTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC
EST: gi|110400162|gb|EC966709.1|EC966709
EST:     AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAG                         GTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTTGTC
genomic: AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAGgtatagcatc ... tatggtgcagGTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC
EST: gi|110383355|gb|EC947723.1|EC947723
EST:     AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAG                         GTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTTGTC
genomic: AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAGgtatagcatc ... tatggtgcagGTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC
EST: gi|33408126|gb|CF213753.1|CF213753
EST:     AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAG                         GTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTTGTC
genomic: AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAGgtatagcatc ... tatggtgcagGTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC
EST: gi|32247477|gb|CD713296.1|CD713296
EST:     AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAG                         GTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC
genomic: AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAGgtatagcatc ... tatggtgcagGTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC
EST: gi|30326158|gb|CD009420.1|CD009420
EST:     AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAG                         GTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC
genomic: AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAGgtatagcatc ... tatggtgcagGTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC
EST: gi|34546868|gb|CF515100.1|CF515100
EST:     AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAG                         GTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTTGTC
genomic: AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAGgtatagcatc ... tatggtgcagGTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC
EST: gi|110408810|gb|EC974453.1|EC974453
EST:     AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAG                         GTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC
genomic: AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAGgtatagcatc ... tatggtgcagGTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC
EST: gi|110391267|gb|EC956231.1|EC956231
EST:     AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAG                         GTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTTGTC
genomic: AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAGgtatagcatc ... tatggtgcagGTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC
EST: gi|110404591|gb|EC969891.1|EC969891
EST:     AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAG                         GTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTTGTC
genomic: AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAGgtatagcatc ... tatggtgcagGTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC
EST: gi|34546689|gb|CF514921.1|CF514921
EST:     AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAG                         GTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTTGTC
genomic: AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAGgtatagcatc ... tatggtgcagGTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC
EST: gi|26263468|gb|CA814531.1|CA814531
EST:     AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAG                         GTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTTC-T
genomic: AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAGgtatagcatc ... tatggtgcagGTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCT-CGT
EST: gi|110362224|gb|EC925742.1|EC925742
EST:     AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAG                         GTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTTGTC
genomic: AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAGgtatagcatc ... tatggtgcagGTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC
EST: gi|110703159|gb|EE079771.1|EE079771
EST:     AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAG                         GTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTTGTC
genomic: AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAGgtatagcatc ... tatggtgcagGTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC
EST: gi|28971176|gb|CB350209.1|CB350209
EST:     AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAG                         GTTATTCAACTGCAAAGTGATCAGCGAAAGAACGTGTCCAATTTTCTTGTC
genomic: AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAGgtatagcatc ... tatggtgcagGTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC
EST: gi|110411871|gb|EC977598.1|EC977598
EST:     AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAG                         GTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC
genomic: AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAGgtatagcatc ... tatggtgcagGTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC
EST: gi|30322834|gb|CD006096.1|CD006096
EST:     AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAG                         GTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC
genomic: AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAGgtatagcatc ... tatggtgcagGTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC
EST: gi|30251574|gb|CB969307.1|CB969307
EST:     AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAG                         GTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTTGTC
genomic: AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAGgtatagcatc ... tatggtgcagGTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC
EST: gi|110412502|gb|EC978252.1|EC978252
EST:     AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAG                         GTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC
genomic: AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAGgtatagcatc ... tatggtgcagGTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC
EST: gi|110399261|gb|EC965758.1|EC965758
EST:     AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAG                         GTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTTGTC
genomic: AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAGgtatagcatc ... tatggtgcagGTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC
EST: gi|110373469|gb|EC937711.1|EC937711
EST:     AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAG                         GTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTTGTC
genomic: AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAGgtatagcatc ... tatggtgcagGTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC
EST: gi|110418116|gb|EC984235.1|EC984235
EST:     AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAG                         GTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC
genomic: AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAGgtatagcatc ... tatggtgcagGTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC
EST: gi|34416092|gb|CF414846.1|CF414846
EST:     AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAG                         GTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTTGTC
genomic: AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAGgtatagcatc ... tatggtgcagGTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC
EST: gi|110427741|gb|EC994191.1|EC994191
EST:     AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAG                         GTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC
genomic: AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAGgtatagcatc ... tatggtgcagGTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC
EST: gi|110398077|gb|EC964179.1|EC964179
EST:     AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAG                         GTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTTGTC
genomic: AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAGgtatagcatc ... tatggtgcagGTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC
EST: gi|34320204|gb|CF372958.1|CF372958
EST:     AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAG                         GTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTTGTC
genomic: AGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAGgtatagcatc ... tatggtgcagGTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGGACTGAAGAAGGATTACAGTTACGAGAAGATCCTCAAGGATCTCAAGAAGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAGgtatagcatcaagttcatgtacaacaacaccaaaaggcccatatcacttgttttgatattgagggtttgacaattaacaaacggtgtgtttgttatggtgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT