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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCACAACCCTGCTACTGGTGATGTTTTAGTAAATGTTCCATGCATGGGAGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTTgtaagtgattattgtgcttctctactatgttgtgattctttggaaagcacaatcttttggattaagcatattttgttgtatttacctattgaggtggggg...

Basic information

species Vitis vinifera
transcript Vv19s0085g00880.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349827094|gb|FQ421367.1|FQ421367
EST:     AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTT                         CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
genomic: AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTTgtaagtgatt ... atctgtgtagCTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
EST: gi|351031176|gb|FQ445003.1|FQ445003
EST:     AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTT                         CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
genomic: AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTTgtaagtgatt ... atctgtgtagCTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
EST: gi|351022976|gb|FQ428885.1|FQ428885
EST:     AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTT                         CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
genomic: AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTTgtaagtgatt ... atctgtgtagCTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
EST: gi|110720877|gb|EE097183.1|EE097183
EST:     AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTT                         CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
genomic: AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTTgtaagtgatt ... atctgtgtagCTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
EST: gi|351026695|gb|FQ436348.1|FQ436348
EST:     AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTT                         CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
genomic: AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTTgtaagtgatt ... atctgtgtagCTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
EST: gi|71860234|gb|DT009289.1|DT009289
EST:     AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTT                         CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
genomic: AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTTgtaagtgatt ... atctgtgtagCTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
EST: gi|351012435|gb|FQ427036.1|FQ427036
EST:     AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTT                         CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
genomic: AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTTgtaagtgatt ... atctgtgtagCTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
EST: gi|161710292|gb|FC059806.1|FC059806
EST:     AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTT                         CTTGGAGCCAACTTACTGCTGCTGAAAGGAGCCAACGTCTGCGGAAATG
genomic: AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTTgtaagtgatt ... atctgtgtagCTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
EST: gi|351023404|gb|FQ432787.1|FQ432787
EST:     AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTT                         CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
genomic: AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTTgtaagtgatt ... atctgtgtagCTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
EST: gi|71858274|gb|DT007329.1|DT007329
EST:     AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTT                         CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
genomic: AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTTgtaagtgatt ... atctgtgtagCTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
EST: gi|37185689|gb|CF605042.1|CF605042
EST:     AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTT                         CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
genomic: AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTTgtaagtgatt ... atctgtgtagCTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
EST: gi|351012851|gb|FQ430414.1|FQ430414
EST:     AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTT                         CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
genomic: AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTTgtaagtgatt ... atctgtgtagCTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
EST: gi|351024564|gb|FQ426373.1|FQ426373
EST:     AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTT                         CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
genomic: AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTTgtaagtgatt ... atctgtgtagCTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
EST: gi|349823645|gb|FQ415055.1|FQ415055
EST:     AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTT                         CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
genomic: AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTTgtaagtgatt ... atctgtgtagCTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
EST: gi|351014822|gb|FQ438022.1|FQ438022
EST:     AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTT                         CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
genomic: AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTTgtaagtgatt ... atctgtgtagCTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
EST: gi|349829516|gb|FQ420048.1|FQ420048
EST:     AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTT                         CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
genomic: AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTTgtaagtgatt ... atctgtgtagCTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
EST: gi|351019842|gb|FQ439659.1|FQ439659
EST:     AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTT                         CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
genomic: AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTTgtaagtgatt ... atctgtgtagCTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
EST: gi|30300500|gb|CB977294.1|CB977294
EST:     AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTGTGAGGCATTCCTTT                         CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
genomic: AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTTgtaagtgatt ... atctgtgtagCTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
EST: gi|351014217|gb|FQ434806.1|FQ434806
EST:     AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTT                         CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
genomic: AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTTgtaagtgatt ... atctgtgtagCTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
EST: gi|33405914|gb|CF211541.1|CF211541
EST:     AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTT                         CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
genomic: AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTTgtaagtgatt ... atctgtgtagCTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
EST: gi|351021635|gb|FQ430522.1|FQ430522
EST:     AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTT                         CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
genomic: AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTTgtaagtgatt ... atctgtgtagCTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
EST: gi|33407740|gb|CF213367.1|CF213367
EST:     AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTT                         CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
genomic: AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTTgtaagtgatt ... atctgtgtagCTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
EST: gi|71864068|gb|DT013123.1|DT013123
EST:     AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTT                         CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
genomic: AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTTgtaagtgatt ... atctgtgtagCTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
EST: gi|110711777|gb|EE088642.1|EE088642
EST:     AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTT                         CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
genomic: AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTTgtaagtgatt ... atctgtgtagCTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
EST: gi|71855632|gb|DT004687.1|DT004687
EST:     AGGGCAGGAGACGAATGATGCGATATCTGTGGCTTATGAGGCATTCCTTT                         CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
genomic: AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTTgtaagtgatt ... atctgtgtagCTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
EST: gi|110711744|gb|EE088569.1|EE088569
EST:     AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTT                         CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
genomic: AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTTgtaagtgatt ... atctgtgtagCTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
EST: gi|71861762|gb|DT010817.1|DT010817
EST:     AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTT                         CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
genomic: AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTTgtaagtgatt ... atctgtgtagCTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
EST: gi|294966112|gb|GW837479.1|GW837479
EST:     AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTT                         CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
genomic: AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTTgtaagtgatt ... atctgtgtagCTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
EST: gi|110717484|gb|EE093391.1|EE093391
EST:     AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTT                         CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
genomic: AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTTgtaagtgatt ... atctgtgtagCTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
EST: gi|351033615|gb|FQ447774.1|FQ447774
EST:     AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTT                         CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
genomic: AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTTgtaagtgatt ... atctgtgtagCTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
EST: gi|71856998|gb|DT006053.1|DT006053
EST:     AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTT                         CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
genomic: AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTTgtaagtgatt ... atctgtgtagCTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
EST: gi|110377270|gb|EC942333.1|EC942333
EST:     AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTT                         CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
genomic: AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTTgtaagtgatt ... atctgtgtagCTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
EST: gi|110685428|gb|EE062138.1|EE062138
EST:     AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTT                         CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
genomic: AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTTgtaagtgatt ... atctgtgtagCTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
EST: gi|351027861|gb|FQ448431.1|FQ448431
EST:     AGGGCAGGAGACGAATGATGCGATATCCGTAGCTTATGAGGCATTCCTTT                         CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
genomic: AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTTgtaagtgatt ... atctgtgtagCTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
EST: gi|351014497|gb|FQ437499.1|FQ437499
EST:     AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTT                         CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
genomic: AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTTgtaagtgatt ... atctgtgtagCTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
EST: gi|349824141|gb|FQ417528.1|FQ417528
EST:     AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTT                         CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
genomic: AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTTgtaagtgatt ... atctgtgtagCTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
EST: gi|351022046|gb|FQ437833.1|FQ437833
EST:     AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTT                         CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
genomic: AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTTgtaagtgatt ... atctgtgtagCTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
EST: gi|71860225|gb|DT009280.1|DT009280
EST:     AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTT                         CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
genomic: AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTTgtaagtgatt ... atctgtgtagCTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
EST: gi|110703160|gb|EE079765.1|EE079765
EST:     AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTT                         CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
genomic: AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTTgtaagtgatt ... atctgtgtagCTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
EST: gi|110711357|gb|EE087747.1|EE087747
EST:     AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTT                         CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
genomic: AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTTgtaagtgatt ... atctgtgtagCTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
EST: gi|110711773|gb|EE088638.1|EE088638
EST:     AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGGGGCATTCCTTT                         CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
genomic: AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTTgtaagtgatt ... atctgtgtagCTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
EST: gi|349832839|gb|FQ422961.1|FQ422961
EST:     AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTT                         CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
genomic: AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTTgtaagtgatt ... atctgtgtagCTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
EST: gi|351015664|gb|FQ427149.1|FQ427149
EST:     AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTT                         CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
genomic: AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTTgtaagtgatt ... atctgtgtagCTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
EST: gi|349827446|gb|FQ422314.1|FQ422314
EST:     AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTT                         CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
genomic: AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTTgtaagtgatt ... atctgtgtagCTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
EST: gi|110700048|gb|EE077644.1|EE077644
EST:     AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTT                         CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
genomic: AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTTgtaagtgatt ... atctgtgtagCTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
EST: gi|161710254|gb|FC060645.1|FC060645
EST:     AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTT                         CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
genomic: AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTTgtaagtgatt ... atctgtgtagCTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
EST: gi|110713914|gb|EE090252.1|EE090252
EST:     AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTT                         CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
genomic: AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTTgtaagtgatt ... atctgtgtagCTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
EST: gi|351012714|gb|FQ430277.1|FQ430277
EST:     AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGGGGCATTCCTTT                         CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
genomic: AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTTgtaagtgatt ... atctgtgtagCTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
EST: gi|349828464|gb|FQ417206.1|FQ417206
EST:     AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTT                         CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
genomic: AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTTgtaagtgatt ... atctgtgtagCTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
EST: gi|110719472|gb|EE094631.1|EE094631
EST:     AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTT                         CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
genomic: AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTTgtaagtgatt ... atctgtgtagCTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
EST: gi|351024107|gb|FQ423530.1|FQ423530
EST:     AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTT                         CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
genomic: AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTTgtaagtgatt ... atctgtgtagCTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
EST: gi|351021887|gb|FQ437674.1|FQ437674
EST:     AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTT                         CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
genomic: AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTTgtaagtgatt ... atctgtgtagCTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
EST: gi|351016508|gb|FQ423935.1|FQ423935
EST:     AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTT                         CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
genomic: AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTTgtaagtgatt ... atctgtgtagCTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
EST: gi|110712898|gb|EE088347.1|EE088347
EST:     AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTT                         CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
genomic: AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTTgtaagtgatt ... atctgtgtagCTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
EST: gi|349832403|gb|FQ420964.1|FQ420964
EST:     AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTT                         CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
genomic: AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTTgtaagtgatt ... atctgtgtagCTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
EST: gi|349831123|gb|FQ420793.1|FQ420793
EST:     AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTT                         CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
genomic: AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTTgtaagtgatt ... atctgtgtagCTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
EST: gi|110719810|gb|EE095263.1|EE095263
EST:     AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTT                         CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
genomic: AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTTgtaagtgatt ... atctgtgtagCTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
EST: gi|161712950|gb|FC062076.1|FC062076
EST:     AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTT                         CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
genomic: AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTTgtaagtgatt ... atctgtgtagCTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
EST: gi|352763959|gb|FQ465409.1|FQ465409
EST:     AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTT                         CTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG
genomic: AGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTTgtaagtgatt ... atctgtgtagCTTGGAGCAAACTTACTGCTGCTGAAAGGAGCAAACGTCTGCGGAAATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCCACAACCCTGCTACTGGTGATGTTTTAGTAAATGTTCCATGCATGGGAGGGCAGGAGACGAATGATGCGATATCTGTAGCTTATGAGGCATTCCTTTgtaagtgattattgtgcttctctactatgttgtgattctttggaaagcacaatcttttggattaagcatattttgttgtatttacctattgaggtggggg

- - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttggaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtgggg